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Details




NbTI01A01

Phenotype Description
Stunted plant
Annotation
Solyc01g087120.2.1;genomic_reference:SL2.50ch01 gene_region:73799914-73805436 transcript_region:SL2.50ch01:73799914..73805436+ functional_description:"F1-ATP synthase delta subunit (AHRD V1 ***- Q9SXX1_IPOBA); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit "
ref|XP_009758218.1|;PREDICTED: ATP synthase subunit O, mitochondrial [Nicotiana sylvestris]
NbS00020265g0006.1;protein AED:0.32 eAED:0.32 QI:176|1|1|1|0.83|0.71|7|243|219; (*GB) gi|4774163|dbj|BAA77508.1| (e_value=4e-104) F1-ATP synthase delta subunit [Ipomoea batatas];; (*SWP) sp|P22778|ATPO_IPOBA (e_value=1e-104) ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G13450.1 (e_value=3e-74) | Symbols: ATP5 | delta subunit of Mt ATP synthase | chr5:4310558-4311941 REVERSE LENGTH=238;; (*ITAG) Solyc01g087120.2.1 (e_value=2e-128) genomic_reference:SL2.40ch01 gene_region:73799914-73805436 transcript_region:SL2.40ch01:73799914..73805436+ functional_description:"F1-ATP synthase delta subunit (AHRD V1 ***- Q9SXX1_IPOBA); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit ";
AT5G13450.1;| Symbols: ATP5 | delta subunit of Mt ATP synthase | chr5:4310558-4311941 REVERSE LENGTH=238
GO ID (Nr annotation)
GO:0046933 GO:0015986
GO ID (Arabidopsis annotation)
GO:0046933 GO:0015986
GO ID (Tomato annotation)
GO:0046933 GO:0015986
GO ID (Niben annotation)
GO:0046933 GO:0015986
Sequence
>NbTI01A01
CCATTTTCAACGGTACAAAGCCTATTAATCTCTGCTGAAAACAAGCCGGCTTCGAAGAAAAGATTCTCTTGCGATGGCAATGGCAGGGCGAGTCAGATCC
ACGCTCCCTCTCCTCCGCAAAGCCCTTTGCTTCGATTTAAGATCCCTCCTCTCCAATCCTGAGTTGTCAAGGACTTATGCTACTGCCCCAGCCAAAGAGC
AAAAAGTTAAGGTCCCTGTAACGATGTATGGAGTTTCTGGAAACTATGCCTCAGCTTTGTACATCGCAGCTGTAAAAGCTAGTGCATTGGAGAAGGTCGA
GTCTGAGATTTTGGACCTTATTGAGGCTTCAAAGAAAAGTCCTAAATTTTCTCAGTTTATGAAGGATCTCTCTGTGCCTACGGACACAAGAGTGAAGGCC
ATAAGTGACATCTGTGCACAGGCTAAATTTGGAGATCTCACAAGGAACTTCTTGGTTGTTTTGGCCGAAAATGGAAGGCTGAAACATATTGATGCCATAG
CAAAAAGGTTTGCAGAGTTAACCATGGCACACAAGGGGGAGCTTAAAGCCATTGTAACAACTGTTATTCCTCTTCCTCCCGAAGAGGAGAAAGAATTGAA
GGAGACATTGCAAGACGTGATGGGAAAAGGGAAGAAGGTGAACATTGAACAGAAGATTGATCCTAGCATTCTTGGTGGGCTTGTGATTGAATTTGGGCAG
AAAGTTTTTGACATGTCGATAAGGACTAGGGCACGCCAGATGGAAAGACTCTTGAAGGAACCTCTCAACTTCTGATTGTGTGGAAGCCTGATTGTGTGGA
AGCCTGTTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1A1.JPG