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Details




NbTI01A03

Phenotype Description
Stunted, bushy, more branched plants (loss of apical dominance)
Annotation
Solyc02g078820.2.1;genomic_reference:SL2.50ch02 gene_region:38056053-38061203 transcript_region:SL2.50ch02:38056053..38061203+ functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- Q8H767_ARATH); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "
ref|XP_009763335.1|;PREDICTED: uncharacterized protein LOC104215273 [Nicotiana sylvestris]ref|XP_009763336.1| PREDICTED: uncharacterized protein LOC104215273 [Nicotiana sylvestris]
NbS00041021g0004.1;protein AED:0.28 eAED:0.28 QI:386|0.85|0.8|1|0.92|0.8|15|0|377; (*GB) gi|357446399|ref|XP_003593477.1| (e_value=2e-165) Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula];; (*TAIR) AT1G11170.1 (e_value=9e-153) | Symbols: | Protein of unknown function (DUF707) | chr1:3741724-3744459 FORWARD LENGTH=438;; (*ITAG) Solyc02g078820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38056053-38061203 transcript_region:SL2.40ch02:38056053..38061203+ functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- Q8H767_ARATH); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 ";
AT1G11170.2;| Symbols: | Protein of unknown function (DUF707) | chr1:3741724-3743828 FORWARD LENGTH=335
GO ID (Nr annotation)
GO:0016021
GO ID (Arabidopsis annotation)
GO:0005578 GO:0005615 GO:0005634 GO:0005788 GO:0005789 GO:0005816 GO:0005829 GO:0008076 GO:0016324 GO:0030425 GO:0033270 GO:0042734 GO:0043025 GO:0043195 GO:0044224 GO:0060077 GO:0000978 GO:0001077 GO:0004890 GO:0005102 GO:0005200 GO:0005251 GO:0005254 GO:0015276 GO:0035612 GO:0042803 GO:0043167 GO:0046982 GO:0001502 GO:0001825 GO:0001964 GO:0006366 GO:0006469 GO:0006937 GO:0007067 GO:0007093 GO:0007166 GO:0007338 GO:0007420 GO:0010629 GO:0010644 GO:0010751 GO:0019228 GO:0023019 GO:0023041 GO:0031122 GO:0032094 GO:0034613 GO:0042346 GO:0043066 GO:0043207 GO:0043523 GO:0045429 GO:0045807 GO:0045944 GO:0046903 GO:0048571 GO:0048666 GO:0048839 GO:0050974 GO:0051092 GO:0051417 GO:0051932 GO:0071310 GO:0071805 GO:1901215 GO:1902476 GO:1903489 GO:1903538 GO:1903576
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0000145 GO:0005802 GO:0005886 GO:0016023 GO:0055037 GO:0072372 GO:0098588 GO:0098805 GO:0005515 GO:0032550 GO:0032561 GO:0043168 GO:0030859 GO:0043001 GO:0048699 GO:0061467 GO:0071310 GO:0071495
Sequence
>NbTI01A03
ACATCTATAAGACTCTTTCCTTTCTCCTTTAACCCCACCCCGTCCACCCTACACCACCCATACACACTGCCACCCTTGTGGTCACTTCTCTCCATATCTA
CTGATTACCTATACATACATATACATATATATTTTGTTCCTAATATTCTGTTTTGGTGACAAATACTTAACTTGGTTCTTTAAAGCTTACTCAGTATTTT
ACTGTTTAAGTATCTGAAGCTGTTAGCAGCTTTTGTTTTTGGTTCAAACCCTTGTTGGGTTTTCAGTTTCTGAGCCTGAGATAGAGTCGAGGTTGGATCC
ATTTTATTCTTCGCAGGACCCTAGTTTGGATATGAGAAGTTTGAACAGTTTGCCTCGTGGTATTATCCAAGCAAGATCAGATCTTGAGTTGAAGCCTCTG
TGGTCAACAAGTAGTTCGAAGTCGAAAGCAAAGGCTAGCAATTCTAGCTGTCATAACTTGTTGGCAGTTCCGGTTGGCATTAATCAGAAGAGCAATGTTG
ATGCTCTTGTTCAAAAGTTTCTTTCAGAGAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAGGACCTCCAATGGAGTAAAGA
TGCCATTCATATTGTTGCTCACAATCAGACGAAATGGTGGTTTGCAAAGAGATTTTTACATCCTGCAGTTGTTTCAATATATGATTACATTTTCCTTTGG
GATGAAGATTTGGGTGTGGAGTATTTCCATCCTGGAAGGTACCTTGAAATTGTTAAATCTGAAGGACTGGTGATTTCTCAGCCTGCCTTAGACCCGAATT
CTACTGGTATCCACCATAGAATCACAATTACGAAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1A1-1D12 [6-20-12]//1A3-2.JPG