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Details




NbTI01H03

Phenotype Description
Moderately stunted, bushy plants
Annotation
Solyc02g079950.2.1;genomic_reference:SL2.50ch02 gene_region:38907616-38909519 transcript_region:SL2.50ch02:38907616..38909519- functional_description:"Oxygen-evolving enhancer protein 3 (AHRD V1 ***- Q7Y1T5_PEA); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ "
ref|XP_009791746.1|;PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Nicotiana sylvestris]gb|AFH58006.1| chloroplast PsbQ2 precursor [Nicotiana benthamiana]
NbS00010498g0007.1;protein AED:0.12 eAED:0.12 QI:0|1|1|1|0.5|1|3|646|228; (*GB) gi|384038831|gb|AFH58006.1| (e_value=5e-128) chloroplast PsbQ2 precursor [Nicotiana benthamiana];; (*SWP) sp|P12301|PSBQ_SPIOL (e_value=1e-78) Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1;; (*TAIR) AT4G05180.1 (e_value=4e-79) | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230;; (*ITAG) Solyc02g079950.2.1 (e_value=6e-120) genomic_reference:SL2.40ch02 gene_region:38907616-38909519 transcript_region:SL2.40ch02:38907616..38909519- functional_description:"Oxygen-evolving enhancer protein 3 (AHRD V1 ***- Q7Y1T5_PEA); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ ";
AT4G05180.1;| Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230
GO ID (Nr annotation)
GO:0009654 GO:0019898 GO:0005509 GO:0015979
GO ID (Arabidopsis annotation)
GO:0009654 GO:0019898 GO:0005509 GO:0015979
GO ID (Tomato annotation)
GO:0009654 GO:0019898 GO:0005509 GO:0015979
GO ID (Niben annotation)
GO:0009654 GO:0019898 GO:0005509 GO:0015979
Sequence
>NbTI01H03
CAAAATGGCTCATGCTATGGCTTCAATGGGTGGCCTAATTGGTTCTTCTCAAACTGTGTTGGATGGTCAGCTCAGTGGCTCAGCCCGTTTGAGCACTGTT
AGCACCAGCAGAATTGCCTTGGCTAGACCAGGACTCAGCATTAGAGCCCAACAGGGGTCTGCTGACACTGAAACTAGCCGTAGAGCCGTCATCGGTCTTG
TTGCTGCTGGCCTTGCTGGTTCCTTTGCTCAAGCAGCCTTTGCTGCAGCTAAATCAATCAAGATTGGGGGCGCTCCTCCTCCCTCTGGTGGATTACCTGG
AACTTTGAACTCGGATGAGGCAAGGGACTTTGGTCTACCATTGAAGAAGAGGTTTTACCTTCAACCATTGACTCCAGCTGAAGCAGCCCAGAGAGTTAAG
GATTCAGCCAAGGAGATTGTTAGCGTCAAGAATTTCATCGACAAGAAGGCCTGGCCATATGTCCAGAATGACCTTCGTCTCAGAGCAGAATACCTTCGCT
ATGACCTTAAAACCGTCATCTCTGCTAAGCCAAAAGAAGAAAAGGGAAAACTCCAGGACCTGACTGGAAAGCTCTTCAAGACCATTAGTGATCTGGACCA
TGCAGCAAGACCAAGAACAGCCCTGAAGCAGAGAAGTACTATGCTGAAACTGTATCTACCTTAAATGATGTTTTGGCCAAACTTGGTTAAAAAGCTTTTC
TGAACTAGTATGTTATTACTTCCTGTAACTTATCGAATACTTCTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1H3.JPG