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Details




NbTI03A08

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc01g102400.2.1;genomic_reference:SL2.50ch01 gene_region:82983065-82985492 transcript_region:SL2.50ch01:82983065..82985492+ functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "
ref|XP_004230375.1|;PREDICTED: germin-like protein 5-1 [Solanum lycopersicum]
NbS00005109g0003.1;protein AED:0.14 eAED:0.14 QI:170|1|0.5|1|0|0.5|2|0|256; (*GB) gi|40949663|gb|AAR97545.1| (e_value=8e-149) germin-like protein [Nicotiana attenuata];; (*SWP) sp|Q94EG3|NEC1_NICLS (e_value=6e-102) Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1;; (*TAIR) AT3G62020.1 (e_value=2e-90) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc01g102400.2.1 (e_value=4e-138) genomic_reference:SL2.40ch01 gene_region:82983065-82985492 transcript_region:SL2.40ch01:82983065..82985492+ functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold ";
AT1G09560.1;| Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219
GO ID (Nr annotation)
GO:0045735
GO ID (Arabidopsis annotation)
GO:0045735
GO ID (Tomato annotation)
GO:0045735
GO ID (Niben annotation)
GO:0045735
Sequence
>NbTI03A08
TGTTTCCTTTTTGGCTTATATTAAACAAAGAATTGTTTAAATAGCACTTTTCTACTTCCACCATGTCTGCATTTGGAAAACTTCTTGTGATTATGGCTAT
GGCTATTTTAGCCATTAACTTAAACAAAGTTTCTGCTGGAGATCCAGATATGCTTCAAGATGTTTGTGTTGCTGATCTTACTTCAAGTTTCACCATAAAT
GGATTCCTTTGCAAGAAGAACTTTTCAGAAATAGACTTTTCATCAATGGCCATAGCCAAGGCAGGAGCAACAAACAACACATACGGTTCCGTAGTCACAG
GTGCCAATGTAATGAAAGTACCTGGTCTTAACACACTTGGTGTCTCACTTTCTCGTATTGATTATGCTCCTGGTGGCATTAATCCACCTCATACTCATCC
TCGTGCTACAGAAATGATCTTTGTTACAGAGGGTGAATTAGATGTTGGTTTTATTACAACATCTAAATGTTTTGATTTCGAAACATATTGTAAAAGGTGA
AGTATTTGTTTTTCCCTAAAGGACTAGTCCATTTCCAGCAGAACAACGGCAAAGTTCCGGCAGCGGTTGTCGCCGCCTTTCAAACAGCCAGTTGCCGGGG
GACTCAAATCCCATTGCTACAACGTTGTTTGCATCCCACACCAACTGTTCCTGATCATGGTCTTGACTAAAGCATTCCCAAATTGGTACAAAACAAGTGG
AGAAAATTTAAGTCAAGGGCTTGCACCTAAGAAATAGACTTTTAATT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3A8..JPG