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Details




NbTI03B01

Phenotype Description
More branches (loss of apical dominance), chlorotic, mottled leaves
Annotation
Solyc09g063130.2.1;genomic_reference:SL2.50ch09 gene_region:56787134-56789056 transcript_region:SL2.50ch09:56787134..56789056+ functional_description:"Photosystem I reaction center subunit IV A (AHRD V1 *-*- B6TH55_MAIZE); contains Interpro domain(s) IPR003375 Photosystem I reaction centre subunit IV/PsaE "
ref|NP_001289527.1|;photosystem I reaction center subunit IV B, chloroplastic [Nicotiana sylvestris]sp|Q41229.1|PSAEB_NICSY RecName: Full=Photosystem I reaction center subunit IV B, chloroplastic; Short=PSI-E B; Contains: RecName: Full=Photosystem I reaction center subunit IV B isoform 2; Flags: Precursorgb|AAB31705.1| photosystem I subunit PSI-E (chloroplast) [Nicotiana sylvestris]
NbS00003075g0011.1;protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|143; (*GB) gi|2499967|sp|Q41229.1|PSAEB_NICSY (e_value=1e-59) RecName: Full=Photosystem I reaction center subunit IV B, chloroplastic; Short=PSI-E B; Contains: RecName: Full=Photosystem I reaction center subunit IV B isoform 2; Flags: Precursor;; (*SWP) sp|Q41229|PSAEB_NICSY (e_value=3e-61) Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1;; (*TAIR) AT2G20260.1 (e_value=1e-33) | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736780-8737644 FORWARD LENGTH=145;; (*ITAG) Solyc09g063130.2.1 (e_value=1e-50) genomic_reference:SL2.40ch09 gene_region:56787134-56789056 transcript_region:SL2.40ch09:56787134..56789056+ functional_description:"Photosystem I reaction center subunit IV A (AHRD V1 *-*- B6TH55_MAIZE); contains Interpro domain(s) IPR003375 Photosystem I reaction centre subunit IV/PsaE ";
AT2G20260.1;| Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736780-8737644 FORWARD LENGTH=145
GO ID (Nr annotation)
GO:0009538 GO:0015979
GO ID (Arabidopsis annotation)
GO:0009538 GO:0015979
GO ID (Tomato annotation)
GO:0009538 GO:0015979
GO ID (Niben annotation)
GO:0009538 GO:0015979
Sequence
>NbTI03B01
ATCTGTTTCATCATTTCTTTGCAGCAGAGACAAATTAAGACATGGCAAGTAGCAGCATGGCTTCTGCTGCATCTGGTTTTATGGTGGCCACACCCAATAT
TGCCACCTCTAACACTGCTCCTCGCACCTCTATGTTATTCTTCTCCTCCTCCAAGAACAACACCACCACCAACTTCCCGAGGCTCGTTGTTAGGGCCGCG
GAAGAGGCTGCGCCGCCAGCTGCTACCGCCACCGCTGAAGGTGAAGCTCCTCCTGCCAAAGCTACCAAGCCACCTCCAATTGGACCCAAGAGAGGAACCA
AAGTGATAGTTTTAAGGAAGGAGTCTTACTGGTACAAGGGGGTTGGTTCAGTTGTAGCTGTTGATCAGGATCCAAACACACGCTACACAGTTGTAGTAAG
GTTCAACAAAGTGAACTATGCAAATGTATCTACCAACAACTACGCATTGGATGAAGTCGAAGAAGTGAAATGAAAGAATGGAAGTAATTAATTAGTTCAT
GCTCTTCATATTTGTAATATGCCCGACACTGTGCTTTCCATGTTTTAATCTCTA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3B1..JPG