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Details




NbTI03B04

Phenotype Description
Mottled leaves
Annotation
Solyc01g110120.2.1;genomic_reference:SL2.50ch01 gene_region:88653085-88663519 transcript_region:SL2.50ch01:88653085..88663519- functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "
ref|XP_009602232.1|;PREDICTED: V-type proton ATPase subunit a2-like [Nicotiana tomentosiformis]
NbS00024152g0007.1;protein AED:0.24 eAED:0.24 QI:0|0.78|0.85|1|0.78|0.75|20|633|910; (*GB) gi|225427716|ref|XP_002265086.1| (e_value=0.0) PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera];; (*SWP) sp|Q54E04|VATM_DICDI (e_value=4e-162) Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2;; (*TAIR) AT4G39080.1 (e_value=0.0) | Symbols: VHA-A3 | vacuolar proton ATPase A3 | chr4:18209513-18214752 FORWARD LENGTH=821;; (*ITAG) Solyc01g110120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88653085-88663519 transcript_region:SL2.40ch01:88653085..88663519- functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit ";
AT2G21410.1;| Symbols: VHA-A2 | vacuolar proton ATPase A2 | chr2:9162703-9168141 FORWARD LENGTH=821
GO ID (Nr annotation)
GO:0033179 GO:0015078 GO:0015991
GO ID (Arabidopsis annotation)
GO:0033179 GO:0015078 GO:0015991
GO ID (Tomato annotation)
GO:0033179 GO:0015078 GO:0015991
GO ID (Niben annotation)
GO:0033179 GO:0015078 GO:0015991
Sequence
>NbTI03B04
AGAATTCGAGTTTAGTGAGGTTTTTGTTCATCAGCTCATTCACACAATTGAATTTGTACTTGGAGCAGTCTCAAACACAGCTTCTTACCTTCGTCTGTGG
GCTCTCAGCCTTGCACACTCTGAGCTGTCCAGTGTATTTTATGAAAAGGTTCTTCTTCTAGCCTGGGGGTTCAACAATGTCTTTATTCTCATCATTGGTA
TCATTGTATTCATCTTTGCCACTGTCGGAGTGTTGTTGGTGATGGAAACTCTCAGTGCCTTCCTACACGCATTGCGACTTCACTGGGTGGAGTTCCAGAA
TAAGTTTTATGAGGGAGATGGTTATAAGTTTAGTCCTTTCTCATTCTCATTGATTGACGGGGAGGATGAATGAGGAAGCATCAAGGATTATAGAATATGA
CGCTCGCTGTTTGTAAGTTGATGTAGATGTGTTCTTCTTTTTGTTTGAACGGTCATCTTAGTGGAGGGGATAAGATTGTTTCTCCTTTTCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3B4..JPG