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Details




NbTI03B10

Phenotype Description
Bushy plants, mottled, pale leaves
Annotation
Solyc12g036200.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch12 gene_region:29804400-29807477 transcript_region:SL2.50ch12:29804400..29807477+ functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q2F670_BOMMO); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type "
ref|XP_009588137.1|;PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Nicotiana tomentosiformis]ref|XP_009588138.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Nicotiana tomentosiformis]ref|XP_009784858.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Nicotiana sylvestris]ref|XP_009784859.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Nicotiana sylvestris]
NbS00018507g0022.1;protein AED:0.42 eAED:0.42 QI:0|1|0.5|1|0.66|0.75|4|0|172; (*GB) gi|217075350|gb|ACJ86035.1| (e_value=2e-69) unknown [Medicago truncatula];; (*SWP) sp|A6QPY8|PIN4_BOVIN (e_value=5e-24) Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1;; (*TAIR) AT1G26550.1 (e_value=3e-70) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9171800-9172716 FORWARD LENGTH=142;; (*ITAG) Solyc12g036200.1.1 (e_value=1e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:29804400-29807477 transcript_region:SL2.40ch12:29804400..29807477+ functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q2F670_BOMMO); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type ";
AT1G26550.1;| Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9171800-9172716 FORWARD LENGTH=142
GO ID (Nr annotation)
GO:0016853
GO ID (Arabidopsis annotation)
GO:0016853
GO ID (Tomato annotation)
GO:0016853
GO ID (Niben annotation)
GO:0016853
Sequence
>NbTI03B10
CCATTCGAAACGATCAAATTCTTAAGTTATGGGAAAGAGACTCCAAGGCTAAGGATTCTGGGGCCAAGGGAAAGGGTAAGCAGGCTGCTGGTGGAAGTGA
GGATGGTGCTTCAAAAGGAAAAGGAAAAGGTGGGAAAGGAGATGGCCTTGGAACCTGCACATATGTTAAAGCAAGGCATATCTTATGTGAGAAGCAATCG
AAGATTAATGAAGCTTACAAGAAACTACAGGAAGGCTGGTTGGACATTGGAGATAAAGTTCCACCAGCTGAGTTTGCCAAGGTAGCTGCTGCTTACTCAG
AATGCCCCTCAGGAAAGAAAGGTGGGGATCTAGGATGGTTTCCACGTGGCAAGATGGCAGGCCCATTTCAGGAAGTTGCCTTCAACACCCCTGTTGGAGT
TACCAGTGCACCTTTTAAATCAACACATGGATACCATATCATTTTAAGTGAAGGGAGGAAAAATTGAGATGTCTGTGCATTCATGTACGCGCAGATGGCA
GAGAAACTCTTCTATTAGGTCATCTGATGCTGCAGTGACTAAGTACTGGTTAAGATGACCCTAATGGTGTGGTTTGCAAGTGTAATGCTAAATAAGTAGA
CATACCAAAATGATTGGATTAAAATTTCTTCCCGGCTCATGTGTATGTCAATATGGGTTATTTTGAAGTCTATGATTGAACTAACACATTCTGTGAAAAT
G
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3B10..JPG