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Details




NbTI03B12

Phenotype Description
Stunted plants, thick, mottled, crinkled, yellow green leaves, no apical gorwth
Annotation
Solyc08g014550.2.1;genomic_reference:SL2.50ch08 gene_region:4642663-4644841 transcript_region:SL2.50ch08:4642663..4644841+ functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR000702 Ribosomal protein L6 "
ref|XP_009619208.1|;PREDICTED: 60S ribosomal protein L9-1 [Nicotiana tomentosiformis]ref|XP_009803596.1| PREDICTED: 60S ribosomal protein L9-1 [Nicotiana sylvestris]
NbS00005152g0006.1;protein AED:0.00 eAED:0.00 QI:111|1|1|1|0.5|0.33|3|349|194; (*GB) gi|77416921|gb|ABA81856.1| (e_value=2e-133) unknown [Solanum tuberosum];; (*SWP) sp|P49209|RL91_ARATH (e_value=8e-122) 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3;; (*TAIR) AT1G33140.1 (e_value=6e-123) | Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023360-12024502 FORWARD LENGTH=194;; (*ITAG) Solyc08g014550.2.1 (e_value=4e-138) genomic_reference:SL2.40ch08 gene_region:4642663-4644841 transcript_region:SL2.40ch08:4642663..4644841+ functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR000702 Ribosomal protein L6 ";
AT1G33140.1;| Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023360-12024502 FORWARD LENGTH=194
GO ID (Nr annotation)
GO:0005840 GO:0003735 GO:0019843 GO:0006412
GO ID (Arabidopsis annotation)
GO:0005840 GO:0003735 GO:0019843 GO:0006412
GO ID (Tomato annotation)
GO:0005840 GO:0003735 GO:0019843 GO:0006412
GO ID (Niben annotation)
GO:0005840 GO:0003735 GO:0019843 GO:0006412
Sequence
>NbTI03B12
GGGAGAGCGATAGAGAGAAACTAAGACAAGATGAAGACCATACTGTCATCAGAAACCATGGATATCCCCGACGGCGTGAGCATCAAGGTGAAGGCAAAGC
AAATCGAAGTAGAGGGACCAAGGGGCAAACTTGTCCGAAACTTCAAGCATCTCAACCTCGATTTTCAGCTGATCAAGGACGAGGAAACTGGCAAGAAGAA
GCTGAAGATCGACGCTTGGTTTGGTTCTCGTAAGACTACCGCTGCTATCCGTACTGCTCTTAGCCATGTTGAGAATCTCATCACTGGTGTTACCAAAGGT
TACCGCTACAAGATGCGTTTCGTGTATGCTCACTTTCCCATCAATGCCTCCATCACCGGTGGTAACAAGTCCATTGAGATCCGTAACTTCCTTGGCGAGA
AGACAGTTAGGAAAGTGGACATGCTTGATGGGGTAACAGTTGTTCGATCTGAGAAGGTGAAGGATGAGCTTGTATTGGATGGAAATGACATTGAGCTCGT
TTCTCGCTCTGCTGCCCTCATCAATCAAAAATGCCATGTGAAGAACAAGGATATCCGAAAGTTTCTTGATGGTATCTATGTCAGTGAGAAGGGCAGAATT
GCAGAAGAAGAATGAGCAGCTGTTTTAGAAGTAGGCATATCACTGATGATTCATATCCAGAATGCCCTTTTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3B12..JPG