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Details




NbTI03C01

Phenotype Description
Pale green leaves
Annotation
Solyc01g079880.2.1;genomic_reference:SL2.50ch01 gene_region:71536915-71541059 transcript_region:SL2.50ch01:71536915..71541059- functional_description:"Asparagine synthetase (AHRD V1 *--- Q9ZST6_ARATH)"
ref|XP_009765315.1|;PREDICTED: stem-specific protein TSJT1 [Nicotiana sylvestris]
NbS00000068g0007.1;protein AED:0.33 eAED:0.33 QI:274|1|1|1|0.75|1|5|392|237; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=1e-38) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT5G19140.1 (e_value=7e-139) | Symbols: ATAILP1, AILP1 | Aluminium induced protein with YGL and LRDR motifs | chr5:6423398-6425785 FORWARD LENGTH=234;; (*ITAG) Solyc01g079880.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:71536915-71541059 transcript_region:SL2.40ch01:71536915..71541059- functional_description:"Asparagine synthetase (AHRD V1 *--- Q9ZST6_ARATH)";
AT5G19140.1;| Symbols: ATAILP1, AILP1 | Aluminium induced protein with YGL and LRDR motifs | chr5:6423398-6425785 FORWARD LENGTH=234
GO ID (Nr annotation)
GO:0005829 GO:0004066 GO:0042803 GO:0006529 GO:0006541
GO ID (Arabidopsis annotation)
GO:0005576 GO:0003824 GO:0005520 GO:0006725 GO:0050794 GO:1901360
GO ID (Tomato annotation)
GO:0005886 GO:0016021 GO:0004969 GO:1901363 GO:0001697 GO:0001698 GO:0003382 GO:0006955 GO:0007186 GO:0007613 GO:0008542 GO:0045907 GO:0048167 GO:0048565 GO:0048732 GO:0071420 GO:1900139 GO:1901998
GO ID (Niben annotation)
GO:0005665 GO:0044429 GO:0070469 GO:0003677 GO:0006366
Sequence
>NbTI03C01
TGCTGGTGATTGAAGCATACAAGGCACTTCGGGACAGGGCACCTTACCCTCCAAATCATGTTGTTGGTCACCTTGAAGGCAATTTTACTTTCATTGTCTT
CGACAAGTCCACTTCCACCTTATTTGTAGCTACCGATCAAGTTGGTAAGGTACCCCTCTACTGGGGAATCACTGCTGATGGGTATGTGGCCTTTGCCAAT
GATGCTGATTTGCTCAAAGGTGCTTGTGGCAAGTCACTTGCTTCTTTTCCTCAAGGGTGTTTCTACTCTACATCAGTTGGAGAATTGAGAAGCTACGAGA
ACCCCAAAAATAAGATCACAGCCGTTCCTGCTACTGAGGAAGAAATCTGGGGTACTAAGTATATGGTGGAAGGTTCAGCCGCAGCTCTTGCAGCCACAGA
ATAGAAGATTTGGTTTTCCTCCAATAGCTCTGCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3C1..JPG