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Details




NbTI03C02

Phenotype Description
Stunted plants, thick, mottled, crinkled, chlorotic leaves
Annotation
Solyc11g072260.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch11 gene_region:52550756-52553441 transcript_region:SL2.50ch11:52550756..52553441- functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "
ref|NP_001275221.1|;40S ribosomal protein S13-like [Solanum tuberosum]ref|NP_001234162.2| cytoplasmic ribosomal protein S13 [Solanum lycopersicum]ref|XP_004229806.1| PREDICTED: 40S ribosomal protein S13 [Solanum lycopersicum]ref|XP_004234944.1| PREDICTED: 40S ribosomal protein S13 [Solanum lycopersicum]ref|XP_004248562.1| PREDICTED: 40S ribosomal protein S13 [Solanum lycopersicum]ref|XP_006347875.1| PREDICTED: 40S ribosomal protein S13-like [Solanum tuberosum]ref|XP_006359204.1| PREDICTED: 40S ribosomal protein S13-like [Solanum tuberosum]ref|XP_009614887.1| PREDICTED: 40S ribosomal protein S13 [Nicotiana tomentosiformis]ref|XP_009621326.1| PREDICTED: 40S ribosomal protein S13 [Nicotiana tomentosiformis]ref|XP_009595142.1| PREDICTED: 40S ribosomal protein S13 [Nicotiana tomentosiformis]ref|XP_009781925.1| PREDICTED: 40S ribosomal protein S13 [Nicotiana sylvestris]ref|XP_009781951.1| PREDICTED: 40S ribosomal protein S13 [Nicotiana sylvestris]ref|XP_009784109.1| PREDICTED: 40S ribosomal protein S13 [Nicotiana sylvestris]ref|XP_009776003.1| PREDICTED: 40S ribosomal protein S13 [Nicotiana sylvestris]gb|ABB86273.1| cytoplasmic ribosomal protein S13-like [Solanum tuberosum]
NbS00000223g0005.1;protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|4|0|156; (*SWP) sp|P62302|RS13_SOYBN (e_value=2e-89) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=5e-87) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=2e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 ";
AT4G00100.1;| Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151
GO ID (Nr annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0005840 GO:0003735 GO:0006412
Sequence
>NbTI03C02
CACCACCTCCAGCCACCATGGGTCGTATGCACAGAAGAGGTAAGGGTATTTCGGCTTCAGCACTTCCGTACAAGAGGACTCCACCAAGTTGGTTGAAAAT
CTCTGCACCTGATGTTGAAGATAACATCTGCAAGTTTGC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3C2..JPG