Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI03C05

Phenotype Description
Pale green leaves
Annotation
Solyc06g063370.2.1;genomic_reference:SL2.50ch06 gene_region:36437291-36439451 transcript_region:SL2.50ch06:36437291..36439451- functional_description:"Chlorophyll a-b binding protein 1A, chloroplastic (AHRD V1 ***- CB2A_PYRPY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "
ref|XP_009616313.1|;PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Nicotiana tomentosiformis]gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
NbS00004085g0015.1;protein AED:0.29 eAED:0.29 QI:92|0.25|0.2|1|1|1|5|0|225; (*GB) gi|110377793|gb|ABG73417.1| (e_value=7e-87) chloroplast pigment-binding protein CP26 [Nicotiana tabacum];; (*SWP) sp|Q9XF89|CB5_ARATH (e_value=2e-72) Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1;; (*TAIR) AT4G10340.1 (e_value=1e-73) | Symbols: LHCB5 | light harvesting complex of photosystem II 5 | chr4:6408200-6409496 FORWARD LENGTH=280;; (*ITAG) Solyc06g063370.2.1 (e_value=1e-86) genomic_reference:SL2.40ch06 gene_region:36437291-36439451 transcript_region:SL2.40ch06:36437291..36439451- functional_description:"Chlorophyll a-b binding protein 1A, chloroplastic (AHRD V1 ***- CB2A_PYRPY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein ";
AT4G10340.1;| Symbols: LHCB5 | light harvesting complex of photosystem II 5 | chr4:6408200-6409496 FORWARD LENGTH=280
GO ID (Nr annotation)
GO:0016020 GO:0009765
GO ID (Arabidopsis annotation)
GO:0016020 GO:0009765
GO ID (Tomato annotation)
GO:0016020 GO:0009765
GO ID (Niben annotation)
GO:0016020 GO:0009765
Sequence
>NbTI03C05
CTCAGACCTCAGACTCCTCCGGCTTCATCGTTAGCAATGGCTGCAGCTACCTCCCTCTACGTCTCGGAAATGTTGGGAAGTCCGGTCAAGTTGAGCGGTG
TAGCGAGGCCAGCTGCTCCAACTCCATCTTCCCCTGCTACCTTCAAAACTGTTGCCCTCTTCAAAAAGAAGGCTGCTGCTGCCCCTGCTAAGAAGGCTGT
TGCTGTCGCCCCTGCTGACGAGGAGCTCGCCAAGTGGTACGGACCTGACAGAAGAATTTTCCTACCCGACGGTCTCTTGGACAGATCAGAAATCCCTGAG
TATTTGAACGGAGAAGTTCCCGGAGACTACGGTTATGATCCTTTTGGTCTCAGCAAGAAGCCAGAAGACTTCGCTAAATATCAGGCATATGAGCTGATCC
ACGCCAGATGGGCTATGCTCGGTGCTGCTGGATTTGTTATCCCTGAAGCCTTCAACAAATTTGGTGCTGACTGTGGTCCTGAAGCTGTATGGTTCAAGAC
TGGTGCATTACTTCTAGATGGAAACACATTGAATTACTTTGGAAAGAACATTCCCATCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3C5..JPG