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Details




NbTI03C11

Phenotype Description
Pale green leaves
Annotation
Solyc05g007200.2.1;genomic_reference:SL2.50ch05 gene_region:1811040-1816032 transcript_region:SL2.50ch05:1811040..1816032- functional_description:"RNA recognition motif containing protein (AHRD V1 **-- B6T581_MAIZE); contains Interpro domain(s) IPR001395 Aldo/keto reductase "
ref|XP_009759493.1|;PREDICTED: protein vip1 [Nicotiana sylvestris]ref|XP_009759494.1| PREDICTED: protein vip1 [Nicotiana sylvestris]
NbS00008135g0011.1;protein AED:0.36 eAED:0.37 QI:16|0.75|0.4|1|0.75|0.6|5|0|263; (*GB) gi|48209876|gb|AAT40482.1| (e_value=2e-140) hypothetical protein [Solanum demissum];; (*SWP) sp|P87216|VIPI_SCHPO (e_value=6e-14) Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1;; (*TAIR) AT1G14340.1 (e_value=3e-75) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897709-4898776 FORWARD LENGTH=244;; (*ITAG) Solyc05g007200.2.1 (e_value=7e-141) genomic_reference:SL2.40ch05 gene_region:1811040-1816032 transcript_region:SL2.40ch05:1811040..1816032- functional_description:"RNA recognition motif containing protein (AHRD V1 **-- B6T581_MAIZE); contains Interpro domain(s) IPR001395 Aldo/keto reductase ";
AT3G01210.1;| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:72182-73159 FORWARD LENGTH=249
GO ID (Nr annotation)
GO:0000166 GO:0003676
GO ID (Arabidopsis annotation)
GO:0000166 GO:0003676
GO ID (Tomato annotation)
GO:0000166 GO:0003676
GO ID (Niben annotation)
GO:0000166 GO:0003676
Sequence
>NbTI03C11
ATCAGCAGATATGAATCCAGGGGGTTATACAGCAGAAGTTACAGGTCTTTCCCCTAATACTACTGAAAAGGATGTTCATGATTTCTTTGGTTTCTGTGGG
GCAATTGAACATGTTGAGATTGTCAGAGCTGGTGACCATGCAAGTACAGGCTATGTGACATTTAGAAATCCTCATGCCTTGGAAACAGCTGTCTTGCTGA
GTGGGGCTACCATTTTGGATCAAC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3C11..JPG