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Details




NbTI03D07

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc04g077970.2.1;genomic_reference:SL2.50ch04 gene_region:60430505-60435397 transcript_region:SL2.50ch04:60430505..60435397- functional_description:"Adenine phosphoribosyltransferase-like (AHRD V1 **** Q2V997_SOLTU); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "
ref|XP_009787204.1|;PREDICTED: adenine phosphoribosyltransferase 1-like [Nicotiana sylvestris]
NbS00020268g0004.1;protein AED:0.37 eAED:0.37 QI:100|1|1|1|1|1|6|421|274; (*SWP) sp|P31166|APT1_ARATH (e_value=1e-89) Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=APT1 PE=1 SV=2;; (*TAIR) AT1G27450.1 (e_value=1e-90) | Symbols: APT1, ATAPT1 | adenine phosphoribosyl transferase 1 | chr1:9532042-9533807 FORWARD LENGTH=243;; (*ITAG) Solyc04g077970.2.1 (e_value=4e-131) genomic_reference:SL2.40ch04 gene_region:60430505-60435397 transcript_region:SL2.40ch04:60430505..60435397- functional_description:"Adenine phosphoribosyltransferase-like (AHRD V1 **** Q2V997_SOLTU); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase ";
AT1G27450.1;| Symbols: APT1, ATAPT1 | adenine phosphoribosyl transferase 1 | chr1:9532042-9533807 FORWARD LENGTH=243
GO ID (Nr annotation)
GO:0005737 GO:0003999 GO:0006168 GO:0009116
GO ID (Arabidopsis annotation)
GO:0005737 GO:0003999 GO:0006168 GO:0009116
GO ID (Tomato annotation)
GO:0005737 GO:0003999 GO:0006168 GO:0009116
GO ID (Niben annotation)
GO:0005737 GO:0003999 GO:0006168 GO:0009116
Sequence
>NbTI03D07
GAACCCGAGTTGAAAACAACCCGGATCACGAGATCCTCTGAGCTTAGCAGATATGGCGCATAAAGATCCGATTCTCAAAGATGATCGCATCGCTCGGATT
TCTTCTTCTATTCGGGTCATCCCCGACTTCCCTAAACCCGGGATTATGTTTCAGGATATAACATCATTGCTACTTGATACTAAGGCATTTAAGGACACTA
TTGATTTGTTTGTTGAGAGATACGAGGACAAAAACATCAGTGTCGTTGCAGGTATTGAAGCAAGAGGTTTCATATTTGGTCCTCCCATCGCATTGGCTAT
TGGGGCAAAATTTGTCCCCATGAGGAAACCCAAGAAGTTGCCTGGGGAGGTTATTTCAGAAGAGTATTCTTTGGAGTATGGAACAGACAAGATTGAGATG
CATGTAGGTGCTGTGCAAGCCGGTGAACGTGCATTCGTGGTAGATGATCTTATCGCAACTGGAGGGACCCTAACTGCTGCAATTAGGCTTCTAGAGCGTG
TTGGAGTTGAGGTGGTCGAGTGTGCATGTCTTATTGAGTTGCCAGAATTGAAGGGCCGGGGACAGGTTAGGTGATAAGCCACTATTTGTTCTTGTGAGCT
CAACCTGATCTTCAATTAGGAAATGGATCTGGACAGGGAGCTTTCATTTGAGGTGGAACTGTAGTGGAGTGACATTTTTGAATTTTGAGAGGGAGAAATC
TCATTTTTTATATCAACCATTGCC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3D7..JPG