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Details




NbTI03D09

Phenotype Description
Pale leaves
Annotation
Solyc06g048410.2.1;genomic_reference:SL2.50ch06 gene_region:27497752-27500186 transcript_region:SL2.50ch06:27497752..27500186+ functional_description:"Superoxide dismutase (AHRD V1 **** Q7YK44_SOLLC); contains Interpro domain(s) IPR019833 Manganese/iron superoxide dismutase, binding site IPR001189 Manganese/iron superoxide dismutase "
ref|XP_009586625.1|;PREDICTED: superoxide dismutase [Fe], chloroplastic isoform X2 [Nicotiana tomentosiformis]
NbS00059057g0001.1;protein AED:0.13 eAED:0.13 QI:245|1|1|1|1|1|9|344|249; (*GB) gi|33413303|emb|CAE22480.1| (e_value=2e-145) superoxide dismutase [Fe] [Solanum lycopersicum];; (*SWP) sp|P22302|SODF_NICPL (e_value=1e-138) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G51100.1 (e_value=9e-101) | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:20773357-20775635 REVERSE LENGTH=305;; (*ITAG) Solyc06g048410.2.1 (e_value=3e-148) genomic_reference:SL2.40ch06 gene_region:27497752-27500186 transcript_region:SL2.40ch06:27497752..27500186+ functional_description:"Superoxide dismutase (AHRD V1 **** Q7YK44_SOLLC); contains Interpro domain(s) IPR019833 Manganese/iron superoxide dismutase, binding site IPR001189 Manganese/iron superoxide dismutase ";
AT4G25100.5;| Symbols: FSD1 | Fe superoxide dismutase 1 | chr4:12884649-12886501 REVERSE LENGTH=212
GO ID (Nr annotation)
GO:0004784 GO:0046872 GO:0006801 GO:0055114
GO ID (Arabidopsis annotation)
GO:0004784 GO:0046872 GO:0006801 GO:0055114
GO ID (Tomato annotation)
GO:0004784 GO:0046872 GO:0006801 GO:0055114
GO ID (Niben annotation)
GO:0004784 GO:0046872 GO:0006801 GO:0055114
Sequence
>NbTI03D09
GGAGAGCCATCTGGTGAATTATTAGAACTAATCAACAGAGACTTTGGTTCCTATGATGCATTTGTTAAAGAATTTAAGGCAGCTGCGGCAACACAATTTG
GCTCTGGTTGGGCCTGGCTCGCATACAAACCTGAAGAGAAAAAGCTTGCCTTGGTGAAAACTCCTAACGCTGAAAATCCTCTTGTTTTGGGTTACACACC
GCTCCTCACCATAGACGTTTGGGAGCATGCTTACTATCTGGACTTTCAGAACCGGCGGCCTGACTACATATCCATCTTTATGGAGAAGCTCGTGTCGTGG
GAAGCAGTCAGTTCTAGGCTTAAAGCAGCAACAGCTTGAGCTGCTTAGCGAGACGACACAAAGGAGGAAGAGTCAAATATAGCAGGCAAGAGAGTAAATA
TTTGAGGCAGGATGATTTTTGTCAAAGAGAAACTATTTTCGGTCCTGCTATTTTTCTTTCTCAGTTGAGAATTTAGATGTCTTATTATGTGCTATTATTT
CTGTTCTTTAGCTGCTGTTAATGGCAGGGAAAAGTGAATCAATTTGAGGTGTGGGACAACAATGTAATGACATGAATAAATAAATCTATTGCACTTTGAT
GCTCTTA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3D9..JPG