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Details




NbTI03E04

Phenotype Description
Green leaves
Annotation
Solyc08g016420.2.1;genomic_reference:SL2.50ch08 gene_region:7447438-7455889 transcript_region:SL2.50ch08:7447438..7455889- functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "
ref|XP_009791574.1|;PREDICTED: prefoldin subunit 6 [Nicotiana sylvestris]
NbS00006489g0009.1;protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|1|0.66|3|0|76; (*GB) gi|297845926|ref|XP_002890844.1| (e_value=6e-35) hypothetical protein ARALYDRAFT_890536 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G29990.1 (e_value=4e-36) | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129;; (*ITAG) Solyc08g016420.2.1 (e_value=8e-40) genomic_reference:SL2.40ch08 gene_region:7447438-7455889 transcript_region:SL2.40ch08:7447438..7455889- functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like ";
AT1G29990.1;| Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129
GO ID (Nr annotation)
GO:0016272 GO:0051082 GO:0006457
GO ID (Arabidopsis annotation)
GO:0016272 GO:0051082 GO:0006457
GO ID (Tomato annotation)
GO:0016272 GO:0051082 GO:0006457
GO ID (Niben annotation)
GO:0016272 GO:0051082 GO:0006457
Sequence
>NbTI03E04
AAATACTCCGGTTCTCTCCACGAATATCCGCCCGCTCCCAGGTCGCCGCCGCACTCCTTTCGCTAAACCCCAAAACTCCGGCAGCAGCAGAGAGCAAATC
AACACAAAAGAAGGTAACTCAATTGTAGAAGAAGTTAAAAGAATGGCCTCGTCAGCTGCTCTTCGAGATATGCAGCGTGACCTAGATAACAAAGCCAACG
ATCTTAGCAAACTTCAAAAAGATATATCAAAGAACCACCAAATCAGAAAGACATACACTATTCAACTAGGTGAAAACGAGCTTGTTCTCAAGGAATTGGA
TCCGTTGAATGAAGATGCGAATGTTTACAAGTTGATAGGGCCAGTGCTTGTGAAGCAGGACTTGGCTGAGGCAAGAGCCAATGTCAAAAAGCGAATTGAA
TACATTTCTGCTGAACTAAAGCGATTAGATAGTACTCTTCAAGACTTGGAAGAAAAGCAGAACAGCAAAAAGGAAACGATTCTGAAGTTACAACAAAAGA
TTCAGTCTCTCCAAGCTGGTAAAGGCAAGGCCTAATGCGCGCCTCTGGTGGTACACTACACTGGTCGGTTGATTTTGATCCTTGTTGAAAGCAGGATTAC
AGTTTCTTGCCGTCCCAGACACTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3E4..JPG