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Details




NbTI03E05

Phenotype Description
Bushy plants, mottled leaves
Annotation
Solyc03g117890.2.1;genomic_reference:SL2.50ch03 gene_region:60949790-60953035 transcript_region:SL2.50ch03:60949790..60953035- functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 **-- UP12_ORYSJ)"
ref|XP_009762796.1|;PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Nicotiana sylvestris]
NbS00010743g0018.1;protein AED:0.18 eAED:0.18 QI:541|1|0.90|1|0.6|0.63|11|0|287; (*GB) gi|359483143|ref|XP_003632910.1| (e_value=6e-132) PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=2e-123) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT1G16880.1 (e_value=9e-124) | Symbols: | uridylyltransferase-related | chr1:5773796-5776125 FORWARD LENGTH=290;; (*ITAG) Solyc03g117890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60949790-60953035 transcript_region:SL2.40ch03:60949790..60953035- functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 **-- UP12_ORYSJ)";
AT1G16880.1;| Symbols: | uridylyltransferase-related | chr1:5773796-5776125 FORWARD LENGTH=290
GO ID (Nr annotation)
GO:0009535 GO:0009570 GO:0009941 GO:0010319 GO:0016597 GO:0016779 GO:0008152 GO:0009735
GO ID (Arabidopsis annotation)
GO:0009414
GO ID (Tomato annotation)
GO:0004709 GO:0000165
GO ID (Niben annotation)
GO:0005615 GO:0005886 GO:0008074 GO:0030424 GO:0043025 GO:0003724 GO:0004016 GO:0004383 GO:0005102 GO:0005525 GO:0020037 GO:0046872 GO:0006182 GO:0006954 GO:0007204 GO:0007217 GO:0007267 GO:0009620 GO:0016070 GO:0019233 GO:0019730 GO:0038060 GO:0042742 GO:0048265 GO:0071732
Sequence
>NbTI03E05
CACAGATGAGTGCACTAAAAAATCTTGGACTAAATGTTGTCAAAGCGAATGTCTGTCTAGATTCATCAGGGAAGCATACTACATTATGCATCACAAATGC
TTCTACTGGTAGAAAGGTCGATGATCCCGAGCAGCTAGAAGCAATTCGTTTGACAATTATCAACAATATGATTGAGTTCCATCCGGAATCTAGCGCCCTG
TTAGCTATGGGTGAAGTCTTCGGTGCTTATCAACCAAATGAAAAGCTTGATGTGGACATAGCAACCCATATCCATGTCTATGACGATGGTCCTGACCGAA
GCTTACTGTATGTAGAGGCAGCAGACCGGCTTGGATTAATAGTTGATCTCGTCAAGATCATTACTGAAATAAACATTGATGTTGAATCAGGAGAATTTGA
TACTGAGGGACTGCTAGCTAAGGCGAAATTTCACGTAAGCTACAAGAACAAAGCTCTCATCAAGCCCCTTCAACAGGTTCTTGCAAACAGTTTGCGCTAT
TACTTAAGGAGACCAACAACAGAAGAGTCAAGTTTTTAATACAGTGCAGAATGAGAGAAAATAACCAGTTGG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3E5..JPG