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Details




NbTI03F04

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc05g052780.2.1;genomic_reference:SL2.50ch05 gene_region:62108501-62112460 transcript_region:SL2.50ch05:62108501..62112460+ functional_description:"LIM domain protein (AHRD V1 **-- Q8VWW1_GOSHI); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "
ref|XP_009587504.1|;PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]
NbS00015149g0013.1;protein AED:0.20 eAED:0.20 QI:223|0.8|0.83|1|0.6|0.66|6|348|190; (*GB) gi|5932420|gb|AAD56951.1|AF184886_1 (e_value=2e-134) LIM domain protein WLIM2 [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=2e-64) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G55770.5 (e_value=6e-113) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:20703799-20705115 FORWARD LENGTH=199;; (*ITAG) Solyc05g052780.2.1 (e_value=4e-129) genomic_reference:SL2.40ch05 gene_region:62108501-62112460 transcript_region:SL2.40ch05:62108501..62112460+ functional_description:"LIM domain protein (AHRD V1 **-- Q8VWW1_GOSHI); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type ";
AT3G55770.5;| Symbols: | GATA type zinc finger transcription factor family protein | chr3:20703799-20705115 FORWARD LENGTH=199
GO ID (Nr annotation)
GO:0008270
GO ID (Arabidopsis annotation)
GO:0005615 GO:0005634 GO:0005789 GO:0009986 GO:0016021 GO:0030130 GO:0030132 GO:0042581 GO:0070062 GO:0071439 GO:0000253 GO:0004252 GO:0004303 GO:0004830 GO:0005148 GO:0005198 GO:0005506 GO:0005524 GO:0008201 GO:0032050 GO:0043539 GO:0001503 GO:0001895 GO:0002227 GO:0006436 GO:0006508 GO:0006695 GO:0006703 GO:0006811 GO:0006886 GO:0019731 GO:0019732 GO:0021766 GO:0031665 GO:0032355 GO:0032680 GO:0032780 GO:0033690 GO:0034145 GO:0042493 GO:0043066 GO:0043123 GO:0044793 GO:0045071 GO:0045669 GO:0045765 GO:0051092 GO:0055072 GO:0055114 GO:0060135 GO:0060349 GO:0071537 GO:0071902 GO:0072583 GO:1900159 GO:1900229 GO:1902732 GO:1990637 GO:2000308 GO:2001205
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0016021 GO:0002376 GO:0032501 GO:0044767
Sequence
>NbTI03F04
CACATCATCATTCTCTCTCTGACCCTCAAAAAACATTCTTCTTTCGCCATTAAACTCTTCATCTGCCATTACCTCGCCGCGTCTCAAAACTTGAACTTTA
ATCCACACATATAATCTTACTTCAGTTCTAGTAGATCAATAGCTGCAACATTTTTGGTTCTTCTTCCAATAGTCAAATATCAGATCTAGCATATATTTTT
GTGTTGAACTTGAAGTTATCAGTGATGTCGTTTACGGGGACACAACAGAAATGCAAGGCATGTGAAAAGACAGTTTACCCAGTTGAGCTTTTGTCAGCAG
ATGGGAATAGTTATCACAAATCTTGCTTTAAATGCACCCATTGTAAAGGAACTCTCAAGCTGAGCAGTTACTCCTCAATGGAGGGTGTTCTGTATTGCAA
GCCCCATTTTGAGCAGCTCTACAAGGAGTCTGGCAACTTCAACAAGAACTTCCAATCGCCTGCGAAGTCAGCTGAGAAGTTAACTCCAGAGCTGACAAGA
TCTCCTAGCAAAGCTTCCAGAATGTTTTCTGGAACACAGGAAAAATGTGCTACCTGCGGTAAAACGGCCTATCCACTTGAGAAGCTGACAGTGGAGAACC
AAAGTTACCACAAGTCATGTTTCAAGTGTTCTCATGGCGGATGCTCTTTAAATCCTTCGAATTATGCTGCACTAGACGGT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3F4..JPG