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Details




NbTI03F05

Phenotype Description
Mottled, crinkled, green leaves, no apical growth
Annotation
Solyc07g065840.2.1;genomic_reference:SL2.50ch07 gene_region:64658676-64662396 transcript_region:SL2.50ch07:64658676..64662396- functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "
gb|ALD51960.1|;heat shock protein 90-1 [Nicotiana benthamiana]
NbS00011481g0021.1;protein AED:0.26 eAED:0.26 QI:148|0.66|0.5|1|1|1|4|0|334; (*GB) gi|118778687|ref|XP_308799.3| (e_value=2e-154) AGAP006959-PA [Anopheles gambiae str. PEST];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=3e-142) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=2e-142) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc07g065840.2.1 (e_value=2e-143) genomic_reference:SL2.40ch07 gene_region:64658676-64662396 transcript_region:SL2.40ch07:64658676..64662396- functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 ";
AT5G56030.1;| Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699
GO ID (Nr annotation)
GO:0005524 GO:0051082 GO:0006457 GO:0006950
GO ID (Arabidopsis annotation)
GO:0005524 GO:0051082 GO:0006457 GO:0006950
GO ID (Tomato annotation)
GO:0005524 GO:0051082 GO:0006457 GO:0006950
GO ID (Niben annotation)
GO:0005524 GO:0051082 GO:0006457 GO:0006950
Sequence
>NbTI03F05
CATCGCTAGATCGGCAATGGCGGACACAGAAACCTTTGCTTTTCAGGCTGAAATTAACCAGCTTTTGAGTCTTATTATCAACACTTTCTACAGCAACAAG
GAGATTTTTCTCCGGGAACTTATTAGCAATTCTTCTGATGCTTTGGACAAGATTCGCTTTGAGAGCTTGACCGACAAGAGCAAGCTTGATGCTCAACCTG
AACTCTTTATCCACATCATTCCTGACAAGACCAACAATACCTTGACTATCATTGACAGTGGTATCGGTATGACCAAGGCTGATCTGGTGAACAACCTTGG
TACAATTGCAAGGTCGGGGACTAAGGAATTTATGGAAGCTCTTGCAGCTGGTGCTGATGTTAGCATGATTGGGCAATTTGGTGTTGGTTTCTATTCAGCT
TACTTGGTGGCTGAGAAGGTTATTGTGACAACAAAGCACAACGATGACGAACAGTATGTTTGGGAGTCTCAAGCTGGTGGTTCATTTACTGTCACCAGGG
ACACTTCTGGGGAGAACCTGGGTAGGGGTACTAAAATGACCCTATATCTCAAGGAGGATCAGCTTGAATATTTGGAAGAGCGCAGGCTCAAGGACCTGAT
TAAGAAGCACTCGGAGTTCATCAGCTACCCCAATCTCTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3F5..JPG