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Details




NbTI03G01

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc10g007670.2.1;genomic_reference:SL2.50ch10 gene_region:1944125-1945603 transcript_region:SL2.50ch10:1944125..1945603+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "
ref|XP_009783949.1|;PREDICTED: uncharacterized protein LOC104232434 [Nicotiana sylvestris]
NbS00000655g0003.1;protein AED:0.16 eAED:0.16 QI:88|0.66|0.75|1|0|0|4|719|150; (*GB) gi|225447436|ref|XP_002266103.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100252893 [Vitis vinifera];; (*TAIR) AT2G33180.1 (e_value=1e-44) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:14066479-14067314 FORWARD LENGTH=166;; (*ITAG) Solyc10g007670.2.1 (e_value=2e-60) genomic_reference:SL2.40ch10 gene_region:1944125-1945603 transcript_region:SL2.40ch10:1944125..1945603+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal ";
AT2G33180.1;| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:14066479-14067314 FORWARD LENGTH=166
GO ID (Nr annotation)
GO:0005506 GO:0051536 GO:0016226
GO ID (Arabidopsis annotation)
GO:0005634 GO:0005737 GO:0070062 GO:0004830 GO:0005524 GO:0006436 GO:0045765
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI03G01
CCTGTGAAGCTTAGACTAAGTGGCAAGTTTTGGCATAAACGTTCTACTGTTGTAGCAAGATTGGGTAATTACTTGAAGCAAAGAATCCCAGAAATCTTGG
ACGTAGATATTGAAGATGAGAAACAATTAGATGATAGCCCTGCAAACTTTTGAGAAGCCTTTTAGTTTCGTTCAAAGGCACTAGGGACGAGCCAGTACAG
AGGCACTAGGGGACGAGCTAATACATGGCAGTTTAAATGATTCCAAATGTTTCGATCATATCAATTTGTCCAAAATATCATTCAACCAGGTCCGGAGGGG
ATGATGGAAGATTTAGTTTTTAT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3G1..JPG