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Details




NbTI03G02

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc07g008770.2.1;genomic_reference:SL2.50ch07 gene_region:3751190-3755390 transcript_region:SL2.50ch07:3751190..3755390+ functional_description:"Unknown Protein (AHRD V1)"
ref|XP_009597931.1|;PREDICTED: uncharacterized protein LOC104093823 [Nicotiana tomentosiformis]
NbS00002614g0011.1;protein AED:0.29 eAED:0.29 QI:0|0.5|0.33|1|1|1|3|413|193; (*GB) gi|294462628|gb|ADE76860.1| (e_value=1e-19) unknown [Picea sitchensis];; (*TAIR) AT1G16840.2 (e_value=5e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5763499-5763984 REVERSE LENGTH=161;; (*ITAG) Solyc07g008770.2.1 (e_value=1e-61) genomic_reference:SL2.40ch07 gene_region:3751190-3755390 transcript_region:SL2.40ch07:3751190..3755390+ functional_description:"Unknown Protein (AHRD V1)";
AT1G78890.1;| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29656623-29657537 FORWARD LENGTH=155
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO:0016021 GO:0000166 GO:0005221 GO:0098655
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0006950 GO:0009628 GO:0042221
Sequence
>NbTI03G02
TTCCCAAATTCAAATCCTAACCCGAACTTTAACCCGACCCAAATTCGCCCCACCTCTTGCCCTCACTCTTCGTCACCGTTCAAACTCCAACCGATCCGGC
GACGGCGATGGTTCCGGCGAAGGAGAACCACCTCACCCTCAGTTAATCGAGATCGATCTCGATTCCTCCTCTATCGGAAGGCGGAATAAGGAAGTTAGAA
GAGGTGATCCATTCGGTTATCGTGAGACGTTCCGCACCTGATTGGCTTCCTTTTTTGCCTGGATACACTTACTGGGTCCCACCTCTTCCTAATCAACCGT
TTGTGAAAGTAGGAGGAGGTATACATGGTCATAGAGGAGGAGGAGGAGGTGATTTTGATCCCCATAGGATTGTTGAGGTTGTGGGGAAGCTTGCTTCTGT
GAGGAGTCATTTTGGCTCGTCTTCGTTGTTGTTGTCGGAGGATGAAACGGCGTGCGTGTCAAGGGTTCGTGGTTGGCCCTCTTCTTCCTTTTTCACTGGA
GGAAGTGCACCCACATTCCCAGTCCCAGTGCAGGTGGTCGAAGTTGGAGGTAAAGCTTGAGGACAACGCAGATTATGACTTTAAATCAGAGGACGAAGGC
TAAATGACCTGTCATCCATAGAGTGAGCTGTCATAGCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3G2..JPG