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Details




NbTI03G06

Phenotype Description
Mild chlorotic top leaves
Annotation
Solyc06g065490.2.1;genomic_reference:SL2.50ch06 gene_region:37270445-37273099 transcript_region:SL2.50ch06:37270445..37273099- functional_description:"PsbP domain-containing protein 6, chloroplastic (AHRD V1 ***- PPD6_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "
ref|XP_009796942.1|;PREDICTED: psbP domain-containing protein 6, chloroplastic [Nicotiana sylvestris]
NbS00000183g0014.1;protein AED:0.25 eAED:0.25 QI:0|1|0.33|1|1|1|3|0|260; (*GB) gi|363814543|ref|NP_001242704.1| (e_value=6e-129) uncharacterized protein LOC100813771 [Glycine max];; (*SWP) sp|Q9LXX5|PPD6_ARATH (e_value=1e-125) PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1;; (*TAIR) AT3G56650.1 (e_value=8e-127) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:20984807-20985913 FORWARD LENGTH=262;; (*ITAG) Solyc06g065490.2.1 (e_value=2e-151) genomic_reference:SL2.40ch06 gene_region:37270445-37273099 transcript_region:SL2.40ch06:37270445..37273099- functional_description:"PsbP domain-containing protein 6, chloroplastic (AHRD V1 ***- PPD6_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich ";
AT3G56650.1;| Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:20984807-20985913 FORWARD LENGTH=262
GO ID (Nr annotation)
GO:0009654 GO:0019898 GO:0005509 GO:0015979
GO ID (Arabidopsis annotation)
GO:0005856 GO:0005886 GO:0031674 GO:0036477 GO:0043005 GO:0043231 GO:0098794 GO:0008092 GO:0006950 GO:0016043 GO:0031324 GO:0043066 GO:0044763 GO:0044767 GO:0048856 GO:0051716 GO:1901700
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI03G06
CCATTGTCCTCCATCTTCTCAAATTCAAATCCACCGTTATTCACATCTGCTAAAACCCAGCAAAGTTTGAAGAAAAACAACATAGACCTATCATTATCAA
GAAGAGATTTGATGAATGTTGGACTTTGTGTAATGCCACTGGTCTTATCCCCTCCTCCTCCGCCTTCCATTGCTCGAGAAGTTGCAGTTGGTTCTTACCT
GCCTCCTTCTCCTACTGATCCTTCTTTTGTTCTCTTCAAAGCCACTCCTAAAGATACTCCTGCTCTTCGTGCCGGAAATGTGCAGCCTTACACGTTTATT
CTTCCTCCAACCTGGAAACAAACTCGTGTGGCTAACATATTATCTGGAAATTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAG
ATGAAAAACAGGGTAAAGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACAAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGT
CATTGCTTCTCTTGGTCCTTTTGTCACAGGAAACACATTGGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACGTATTACAAG
TATGTTCTTGAAACTCCATATGCCCTTACTGGGATCGCACAACCTAGCAAGGCACGGCTAAGGGAAATACTGTCGTCCTCTTTGTGGTCAGTGCCAATGA
C
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3G6..JPG