Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI03H06

Phenotype Description
Mottled top leaves
Annotation
Solyc02g070050.2.1;genomic_reference:SL2.50ch02 gene_region:34410781-34413638 transcript_region:SL2.50ch02:34410781..34413638- functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "
ref|XP_009774862.1|;PREDICTED: fatty acid 2-hydroxylase 1-like [Nicotiana sylvestris]ref|XP_009774863.1| PREDICTED: fatty acid 2-hydroxylase 1-like [Nicotiana sylvestris]
NbS00053672g0007.1;protein AED:0.08 eAED:0.08 QI:390|1|1|1|0.66|0.71|7|315|236; (*SWP) sp|Q2LAM0|FA2H_RAT (e_value=3e-58) Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2;; (*TAIR) AT2G34770.1 (e_value=1e-135) | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237;; (*ITAG) Solyc02g022910.2.1 (e_value=2e-116) genomic_reference:SL2.40ch02 gene_region:15104222-15107083 transcript_region:SL2.40ch02:15104222..15107083+ functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase ";
AT2G34770.1;| Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237
GO ID (Nr annotation)
GO:0005506 GO:0016491 GO:0006633 GO:0055114
GO ID (Arabidopsis annotation)
GO:0005506 GO:0016491 GO:0006633 GO:0055114
GO ID (Tomato annotation)
GO:0005506 GO:0016491 GO:0006633 GO:0055114
GO ID (Niben annotation)
GO:0005506 GO:0016491 GO:0006633 GO:0055114
Sequence
>NbTI03H06
ATTCCATATTAATACAACGAGCTATTGGGGAAACACTGCTCATTATCTTCTTCATGGCTGTCATCATAAGCATCCCATGGATGGTCTACGGCTTGTTTTT
CCACCTGCTGCAACGGCTGTTCTTTGCATACCTTTCTGGAACTTGATCAAATTCCTGGCGACTCCCTCTACTGCTCCTGCTTTGTTTGGAGGCGGTCTAT
TGGGCTACGTTATGTATGATGTCACCCACTACTACTTGCATCACGGACAACCGACAAATGAAGTGCCTAAAAGTCTTAAGAAATATCACTTGAATCATCA
TTTTCGTATCCAGAACAAAGGTTTTGGCATTACCTCCTCTTTCTGGGACAAGGTATTTGGAACGCTACCACATTCAACATCAGCCAAGAACAGATGATTC
CCTTTGGGGAGGAGAATTACAGTACTAATTGCTATCTATTAGAAGGGTTTAGAATTTTATTCTTTGAAATCTAGTTCCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3E1-3H12[7-19-12]//3H6..JPG