Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI09E06

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc03g032160.2.1;genomic_reference:SL2.50ch03 gene_region:8939357-8949528 transcript_region:SL2.50ch03:8939357..8949528- functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "
ref|XP_009773232.1|;PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X2 [Nicotiana sylvestris]
NbS00008512g0023.1;protein AED:0.16 eAED:0.16 QI:183|1|1|1|0.85|1|8|627|550; (*GB) gi|255561391|ref|XP_002521706.1| (e_value=0.0) plant ubiquilin, putative [Ricinus communis];; (*SWP) sp|Q9NIF3|UBQL_DICDI (e_value=1e-54) Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1;; (*TAIR) AT2G17200.1 (e_value=2e-168) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc03g032160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8939357-8949528 transcript_region:SL2.40ch03:8939357..8949528- functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin ";
AT2G17200.1;| Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551
GO ID (Nr annotation)
GO:0005515
GO ID (Arabidopsis annotation)
GO:0005515
GO ID (Tomato annotation)
GO:0005515
GO ID (Niben annotation)
GO:0005515
Sequence
>NbTI09E06
GCTGCCCAAGCCAATACCCCTGCTAGGTCAAATACTGCTGCCGATACTAGGGCTGCACCACTTGGTGGCTTAGGTGGACTTGCTTCCCCAGGTTTGGAGC
AAATGCTAAGTGGCATGCCAGATACCACTTCTCTAAACCAAATGATGCAGAACCCTGCGATCTCACAGATGATGCAATCTCTCCTCTCAAATCCTCAGTA
CATGAACCATGTTTTAGGGCTGAACCCACAGCTAAGAAGCATGCTCGATTCCAACTCCCATCTTAGAGAAATGATGCAAAATCCTGAGTTTATTCGTCAA
TTGACATCACCTGAGACAATGCAGCAACTTATGACTTTTCAGCATGGGCTTTTGTCTCAAGCTTGGCGACAGCAAACAAACCAACAAGTGGGTCAAAATG
CTGGTGGAGCAGCAGGTGACAACGGAATGGAAATGCTGATGAACATGTTTGGTGGACTTGAGACGGGGGGCTTGGGTGTTCCTAACAGATCTAATGTGCC
CCCAGAGGAACTATATGCTACTCAGCTAACTCAGTTACAAGAAATGGGTTTCTTTGACACTCAAGAAAATATCCGGGCACTGATTGCCACTGCAGGCAAT
GTTCATGCTGCAGTAGAGCGACTTATTGGAAATTCTGGACAGTAGTGTCAGTATTTGACTATAGGACAACACAGCAACTGATGGCTCGGATGAATTGATC
GATTTTGGACACAGCTTCATATCTGCTGGAGATAAATATTCAAAATTTTAGTACTTGGATCCGCATCTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9E6.JPG