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Details




NbTI09E10

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc01g088610.2.1;genomic_reference:SL2.50ch01 gene_region:75132658-75135971 transcript_region:SL2.50ch01:75132658..75135971- functional_description:"chaperonin (AHRD V1 ***- B5IMI3_9CHRO); contains Interpro domain(s) IPR001476 Chaperonin Cpn10 "
ref|XP_009767520.1|;PREDICTED: 10 kDa chaperonin, cyanelle-like [Nicotiana sylvestris]
NbS00028734g0015.1;protein AED:0.68 eAED:0.77 QI:0|0.5|0.28|0.71|1|1|7|0|135; (*GB) gi|225453275|ref|XP_002267346.1| (e_value=2e-72) PREDICTED: 20 kDa chaperonin, chloroplastic [Vitis vinifera];; (*TAIR) AT3G60210.1 (e_value=7e-66) | Symbols: | GroES-like family protein | chr3:22251443-22252709 REVERSE LENGTH=138;; (*ITAG) Solyc01g088610.2.1 (e_value=6e-90) genomic_reference:SL2.40ch01 gene_region:75132658-75135971 transcript_region:SL2.40ch01:75132658..75135971- functional_description:"chaperonin (AHRD V1 ***- B5IMI3_9CHRO); contains Interpro domain(s) IPR001476 Chaperonin Cpn10 ";
AT3G60210.1;| Symbols: | GroES-like family protein | chr3:22251443-22252709 REVERSE LENGTH=138
GO ID (Nr annotation)
GO:0005759 GO:0009507 GO:0046872 GO:0051082 GO:0051087 GO:0006986 GO:0051085
GO ID (Arabidopsis annotation)
GO:0004590 GO:0006207 GO:0044205
GO ID (Tomato annotation)
GO:0005654 GO:0003700 GO:0003707 GO:0008270 GO:0043565 GO:0046982 GO:0006351 GO:0007283 GO:0021549 GO:0030154 GO:0038066 GO:0040019 GO:0043401 GO:0045663 GO:0045944 GO:0048520 GO:0051321 GO:0098779
GO ID (Niben annotation)
GO:0005737 GO:0003746 GO:0003924 GO:0005525 GO:0006414
Sequence
>NbTI09E10
ACCTCTTTCTCTACCCWAAGACCTAKRGGTCTGAAGACAAATTCATTAAGAATTAATGCAATTTCCAAGAAATGGGAACCCRCAARGGTTGTGCCGCAMG
CTGATAGAGTTTTGATTCGGTTAGAGGAGTTGTCTGARAAATCTGCTGGTGGAGTTTTGCTTCCAAAATCAGCAGTGAARTTCGAGCGCTATCTWATGGG
AGAAGTTCTCTCTGTTGGTTCAGAGGTTGCTCRMGTAGAGGCGGGGAAGAAGGTTCTTTTCTCTGACATCAACGCTTACRAGGTGGATTTGGGAACTGAT
GCAAGGCATTGTTTCTGCAAGGAGAGCGAGTTGCTTGCTTTGGTTGAATAAATGGTCTCCTATTTGCATTATGTTAGGGCGCCMAGTTTTGTCAGGTTCT
ACCTCTCAAAAGACAGCAAATGTGTTGTAACATCTCAYCTTTTGTAGAACAACAWAWATGTTGAGATTAATATTTCTAGTGSATGTTATTCTGATTTACA
AACGGTAAGTGTTGAGATTGAGATAAATTTTCGACAAATATTACTTCATAAAGAATTTAGACMCTTTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9E10.JPG