Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI09E12

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc01g095990.2.1;genomic_reference:SL2.50ch01 gene_region:78862543-78865800 transcript_region:SL2.50ch01:78862543..78865800+ functional_description:"Phosphatidylinositol kinase family-like protein (Fragment) (AHRD V1 *--- C3SA88_BRADI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "
ref|XP_009770185.1|;PREDICTED: phosphatidylinositol 4-kinase gamma 4-like [Nicotiana sylvestris]
NbS00002297g0016.1;protein AED:0.13 eAED:0.13 QI:15|0.5|0.66|1|0.5|0.33|3|584|585; (*GB) gi|255564699|ref|XP_002523344.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=3e-59) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G46500.2 (e_value=0.0) | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566;; (*ITAG) Solyc01g095990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78862543-78865800 transcript_region:SL2.40ch01:78862543..78865800+ functional_description:"Phosphatidylinositol kinase family-like protein (Fragment) (AHRD V1 *--- C3SA88_BRADI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic ";
AT2G46500.2;| Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566
GO ID (Nr annotation)
GO:0005829 GO:0004430 GO:0004674 GO:0009651 GO:0046777 GO:0046854
GO ID (Arabidopsis annotation)
GO:0005886 GO:0043229 GO:0043234 GO:0044444 GO:0004723 GO:0043167 GO:0046983 GO:0006464 GO:0006796 GO:0010033 GO:0042592 GO:0044763 GO:0048522 GO:0048583 GO:0050796 GO:0051222
GO ID (Tomato annotation)
GO:0005829 GO:0005887 GO:0009897 GO:0016324 GO:0030864 GO:0031514 GO:0034706 GO:0060170 GO:0070062 GO:0003779 GO:0015280 GO:0050699 GO:0008217 GO:0035725 GO:0050891 GO:0050909 GO:0055078
GO ID (Niben annotation)
GO:0005576 GO:0005730 GO:0005829 GO:0005856 GO:0005886 GO:0014069 GO:0016533 GO:0030027 GO:0030054 GO:0030175 GO:0030424 GO:0030425 GO:0030426 GO:0031594 GO:0043025 GO:0002039 GO:0003676 GO:0004522 GO:0004693 GO:0005176 GO:0008092 GO:0019901 GO:0030549 GO:0042802 GO:0043125 GO:0046875 GO:0050321 GO:0001764 GO:0001963 GO:0006886 GO:0006913 GO:0007160 GO:0007416 GO:0007519 GO:0008045 GO:0008542 GO:0009611 GO:0014044 GO:0018107 GO:0019233 GO:0021697 GO:0021766 GO:0021819 GO:0021954 GO:0022038 GO:0030334 GO:0030517 GO:0030866 GO:0031397 GO:0031914 GO:0032092 GO:0032801 GO:0033136 GO:0035249 GO:0035418 GO:0043113 GO:0043525 GO:0045055 GO:0045786 GO:0045860 GO:0045861 GO:0045892 GO:0045956 GO:0046777 GO:0046826 GO:0048148 GO:0048488 GO:0048675 GO:0048709 GO:0048813 GO:0051402 GO:0060079 GO:0061001 GO:0070509 GO:0090314 GO:0090502 GO:1901215
Sequence
>NbTI09E12
TTTTCTGGTGAGGCACTGGGCTTTGCTGGTGTTCCACCAGCTCTCTTTGTGAGGTGTCTCCACAGTGGATTCAATCACCCAGATGGTATCACTCCTAAGA
TTGGCTCCTTGCAAAAGTTCATGGAGAACAATGGAAGTTGTGAGGATATGGGTCMCAGTGCTTTTCCTGTAGGGGAAGTGCATAAGATTGCAGTGCTTGA
TATGAGGATGGCAAATGCAGATAGGCATGCAGGGAATATTTTAACGAGCAAAGGTGACGATGGGCAGATTGTCCTCATTCCAATTGATCATGGTTACTGC
TTGCCTGACAGTTTTGAAGATGTAACTTTTGACTGGCTGTATTGGCCACAAGCTCGTCAGCCTTTTAACTCCGAAACCATTGAGTACATAAAATCACTTG
ATGCGGAAGAGGACATTGCCTTGTTGAAGTTTTACGGGTGGGACATGCCTTTAGAAAGTGCCCGCACACTCCGCATCTCTACTATGCTTTTGAAGAAAGG
TGCAGAGAGGGGCCTCACGGCATTTACCATAGGAAACATCATGTGCCGCGAGACCTTGAACAAGGAATCTGTGATTGAGGAGATTGTTCAAGAAGCACTG
GACTCTGTGCTTCCTGGCTCAAGTGAAGATGCATTCCTTGAGACCATCTCACATATATGGATCAACGCCTTGATGAGATTTCCTATTGATATTTCATTGA
AGAATT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9E12.JPG