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Details




NbTI09F02

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc06g068480.2.1;genomic_reference:SL2.50ch06 gene_region:38831809-38837277 transcript_region:SL2.50ch06:38831809..38837277- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q01G24_OSTTA); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "
ref|XP_009627900.1|;PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic [Nicotiana tomentosiformis]
NbS00010134g0014.1;protein AED:0.31 eAED:0.31 QI:177|0.9|0.90|1|0.7|0.72|11|289|337; (*GB) gi|225443166|ref|XP_002264352.1| (e_value=1e-169) PREDICTED: uncharacterized protein LOC100263772 [Vitis vinifera];; (*TAIR) AT1G73060.1 (e_value=3e-160) | Symbols: LPA3 | Low PSII Accumulation 3 | chr1:27479027-27481258 FORWARD LENGTH=358;; (*ITAG) Solyc06g068480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38831809-38837277 transcript_region:SL2.40ch06:38831809..38837277- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q01G24_OSTTA); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 ";
AT1G73060.1;| Symbols: LPA3 | Low PSII Accumulation 3 | chr1:27479027-27481258 FORWARD LENGTH=358
GO ID (Nr annotation)
GO:0009570 GO:0009571 GO:0009735 GO:0010207
GO ID (Arabidopsis annotation)
GO:0005829 GO:0004692 GO:0005246 GO:0005524 GO:0030553 GO:0006468 GO:0043087 GO:0090331
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0009986
Sequence
>NbTI09F02
GCCAATATCCAACTTGTACTAGCTGTTGTTCAGAAGCTTCAGGAAAAGAAGGAAACTAGAGCTTGTGTGGTGTTTCCTGACAAACCTGAAAAGCGTAGGG
CCTCCGAGCTTTTCAAAGCAGCTCTAGACTCGATAGATGGTATTACCATTGGGTCCTTGGATGATATTCCTGGTGGTGCTGTGACCTCATTCTTCAGATC
CGTAAGGAATACACTGGACTTCGATTTTGACGATGATAATGAAGGTCGTTGGAAGTCTGACAAGCCTCCTACACTTTATATATTTATCAACTGCAGCACT
CGTGACCTTGCATACATTGAGAAGTATGTGGAAAAAATTGCTACATCAACCCCTAGCCTCCTTTTCAATCTAGAGCTTGACACCTTGCGAGCTGACCTGG
GTATTTTTGGCTTTCCACCCAAGGAATTGCATTACCAATTTCTTTCTCAATTCACCCCAGTTTTCTATATTCGAACAAGAGAGTACTCGAAGACAGTTGC
AGTGGCACCATATATTGTGAACTACAGCGGAGCTCTCTTCCGTCAATATCCTGGGCCTTGGCAGGTGATGCTGAAACAGACAGATGGTTCTTTTGTTTGT
GTGGCAGAGAGCGCAACTCGCTTCACTCTTGGCGAAACCAAGGAAGAACTATTGAGAGTCCTCGGACTGCAAGAGGAGAAAGGAAGCTCGCTTGAATTTC
TCAGAAGAGGCTACAAGACTGCAACTTGGTGGGAAGAAGATGTTGATTTAGAAGCATCCTCTGCATGGCGTAGCTGAACAGAAGATTACCAGAGAAGATG
ATGGCGGATGGAGAGTTAAAACATAAAAACTCGGGTGGTGGGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9F2.JPG