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Details




NbTI09F05

Phenotype Description
Stunted plants
Annotation
Solyc07g009160.2.1;genomic_reference:SL2.50ch07 gene_region:4204055-4210261 transcript_region:SL2.50ch07:4204055..4210261+ functional_description:"Neighbor of COX4 (AHRD V1 ***- D3PHS4_9MAXI); contains Interpro domain(s) IPR005366 Uncharacterised protein family UPF0172 "
ref|XP_009770348.1|;PREDICTED: ER membrane protein complex subunit 8/9 homolog [Nicotiana sylvestris]ref|XP_009770349.1| PREDICTED: ER membrane protein complex subunit 8/9 homolog [Nicotiana sylvestris]
NbS00013187g0015.1;protein AED:0.32 eAED:0.32 QI:169|1|1|1|1|1|5|494|205; (*GB) gi|255563580|ref|XP_002522792.1| (e_value=6e-87) Neighbor of COX4, putative [Ricinus communis];; (*SWP) sp|Q9FG71|U172_ARATH (e_value=4e-79) UPF0172 protein At5g55940 OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1;; (*TAIR) AT5G55940.1 (e_value=3e-80) | Symbols: emb2731 | Uncharacterised protein family (UPF0172) | chr5:22656256-22657894 REVERSE LENGTH=208;; (*ITAG) Solyc07g009160.2.1 (e_value=2e-112) genomic_reference:SL2.40ch07 gene_region:4204055-4210261 transcript_region:SL2.40ch07:4204055..4210261+ functional_description:"Neighbor of COX4 (AHRD V1 ***- D3PHS4_9MAXI); contains Interpro domain(s) IPR005366 Uncharacterised protein family UPF0172 ";
AT5G55940.1;| Symbols: emb2731 | Uncharacterised protein family (UPF0172) | chr5:22656256-22657894 REVERSE LENGTH=208
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO:0005615 GO:0005794 GO:0005925 GO:0009897 GO:0042612 GO:0070062 GO:0001948 GO:0042802 GO:0001895 GO:0001916 GO:0002481 GO:0002726 GO:0003254 GO:0019731 GO:0019885 GO:0033077 GO:0042026 GO:0048260 GO:0050829 GO:0050830 GO:0055072 GO:0071222 GO:0071281 GO:1900121 GO:1903991 GO:1904434 GO:1904437
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005576 GO:0003993 GO:0046872 GO:0016311 GO:0060919 GO:2000024
Sequence
>NbTI09F05
CGGATTTTATTTTTGCTGGCGCCTGCAAAAAGGGTTTCACAGTAATTGTCGTGTTCGAGATGGGGGGCGGCGAATCAAATTACGAGATTCATCAGAACGC
GTACATCAAGTTAATCCTACATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGCGTTCTTCTCGGCCGGATCTCCGGCAACGATTGCAACGTCGAAATT
GTGGAATCAGTTTCCTTGTTCCACTCTCATATTGGTCTCCTTCCTCCACTCGAAATCTCCCTTATCATGATTGAGGAGTATTATGCTGATAAAGGTTTGA
GTATTGTGGGTTACTTTCACGCAAATGAAAGATTTGATGATTTTGAGGTTGGGAATGTGGCCAAGAATATTGCAGATCACATCTTCAAATATTTCCCTCA
AGCGGCTTTGCTTCTGTTGGATAACAAGAAGCTTGAAGCTTTACTAAAGGAGGGGAAAGACAGGAGTCCTGTAATGCAGCTTTTCACTAAGGAAGTATCT
AGGAGCTGGAAACTAGTGGGAACGGATGCAAGCAGCCCTCTGAAAATCAAGGAGCCATCTGCAAATATTGTCCTTTTAGATTATATATCGTCAGGAAAAT
GGAAGGATATCGTAGACTTCGACGACCACCTGGATGACATTAGCAAGGACTGGCTGAATCCAGAGCTCTTCAAGTGAAGTTTCTATGAAAGCACGGAAAC
TATCGTGTGGTTACCATGTGATATTCGGTGTTTATCCCTCCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9F5.JPG