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Details




NbTI09F06

Phenotype Description
Stunted plants
Annotation
Solyc08g016420.2.1;genomic_reference:SL2.50ch08 gene_region:7447438-7455889 transcript_region:SL2.50ch08:7447438..7455889- functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "
ref|XP_009791574.1|;PREDICTED: prefoldin subunit 6 [Nicotiana sylvestris]
NbS00038440g0002.1;protein AED:0.09 eAED:0.09 QI:0|0.5|0|0.66|1|1|3|0|69; (*GB) gi|357488567|ref|XP_003614571.1| (e_value=5e-37) Prefoldin subunit [Medicago truncatula];; (*SWP) sp|Q9VW56|PFD6_DROME (e_value=3e-16) Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1;; (*TAIR) AT1G29990.1 (e_value=4e-38) | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129;; (*ITAG) Solyc08g016420.2.1 (e_value=1e-40) genomic_reference:SL2.40ch08 gene_region:7447438-7455889 transcript_region:SL2.40ch08:7447438..7455889- functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like ";
AT1G29990.1;| Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129
GO ID (Nr annotation)
GO:0016272 GO:0051082 GO:0006457
GO ID (Arabidopsis annotation)
GO:0016272 GO:0051082 GO:0006457
GO ID (Tomato annotation)
GO:0016272 GO:0051082 GO:0006457
GO ID (Niben annotation)
GO:0016272 GO:0051082 GO:0006457
Sequence
>NbTI09F06
TATCCACCCGCTCCCGGTTGCCGCCGCACTCCTTTCCCTAAACCCCAAAACTCCGGCAGTAGCAGAGAGCAAATCAACACAAAAGAAGGTAACCCCATTG
CAGAAGAAGTTAAAAGAATGGCCTCGTCAGCTGCTCTTCGAGATTTGCAGCGTGACCTAGAGAACAAAGCCAACGATCTTAGCAAACTTCAAAAAGATAT
ATCAAAGAACCACCAAATCAGAAAGAAGTACACCATTCAACTAGGTGAAAACGAGCTTGTTCTCAAGGAATTGGATCTATTGAATGAAGATGCGAACGTT
TACAAGTTGATAGGGCCAGTACTTGTGAAGCAGGACTTGGCTGAGGCAAGAGCCAATGTCAAAAAGCGAATTGAATACATTTCTGCTGAACTAAAGCGAT
TAGATGGTACTCTTCAAGACTTGGAAGAAAAGCAGAACAGCAAAAAGGAAACGATTCTGAAGTTTCAACAAAAGATTCAGTCTCTCCAAGCTGGTAAAGG
CAAGGCCTAATGCACGCCTCTGGTGGTACACTACACTGGTCGGTTGATTTTGATCCGTATTGAAAGCAGGATTACAGTGTCTTGTTGTCCCAGACACTCG
GACGTTTGCCTTATTGTTCGATTGGCTTTTGTAGATCCATGGTTTGGTACTTTGTATGATCTTGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9F6.JPG