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Details




NbTI09F07

Phenotype Description
Stunted plants
Annotation
Solyc08g048550.2.1;genomic_reference:SL2.50ch08 gene_region:40724238-40730507 transcript_region:SL2.50ch08:40724238..40730507- functional_description:"Protease Do-like (S2 serine-type protease) (AHRD V1 **** A6CGY1_9PLAN); contains Interpro domain(s) IPR001254 Peptidase S1 and S6, chymotrypsin/Hap "
ref|XP_009778590.1|;PREDICTED: protease Do-like 5, chloroplastic [Nicotiana sylvestris]
NbS00008422g0005.1;protein AED:0.35 eAED:0.35 QI:0|1|1|1|0.85|0.62|8|258|307; (*GB) gi|255557249|ref|XP_002519655.1| (e_value=4e-144) Protease degS precursor, putative [Ricinus communis];; (*SWP) sp|Q9SEL7|DEGP5_ARATH (e_value=3e-127) Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3;; (*TAIR) AT4G18370.1 (e_value=2e-128) | Symbols: DEG5, DEGP5, HHOA | DEGP protease 5 | chr4:10149235-10151051 FORWARD LENGTH=323;; (*ITAG) Solyc08g048550.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:40724238-40730507 transcript_region:SL2.40ch08:40724238..40730507- functional_description:"Protease Do-like (S2 serine-type protease) (AHRD V1 **** A6CGY1_9PLAN); contains Interpro domain(s) IPR001254 Peptidase S1 and S6, chymotrypsin/Hap ";
AT4G18370.1;| Symbols: DEG5, DEGP5, HHOA | DEGP protease 5 | chr4:10149235-10151051 FORWARD LENGTH=323
GO ID (Nr annotation)
GO:0004252 GO:0006508
GO ID (Arabidopsis annotation)
GO:0004252 GO:0006508
GO ID (Tomato annotation)
GO:0004252 GO:0006508
GO ID (Niben annotation)
GO:0004252 GO:0006508
Sequence
>NbTI09F07
TGGTTTTGGGAGTTGTTTCTCCACAGTATATCCTCCCTTTAATTCCCATATGTAAAACCCAAATTCCCCCGAATTCTTCAGAAACCCAACATTTGACGAG
GCGTAAAGCAGCTTTGATATTTACTTCTTCTCTGGTTTCTTCTTTCATATATACATCTCATCACTCTGCTACTGCTTTCCAAGTCGACGAATTTCAGCAG
GATGAAGATAGAATTGTTCAGCTCTTTGAGGAAACTTCCCCTTCTGTTGTTTTCATTAAGGACCTTGAGTTGGCTAAAGGCTCCAATGGCTCTACTACGG
TCCTAGCTAACGACGAGAATGCAAAAGTGGAAGGGACAGGTTCGGGCTTCATTTGGGATAAGTTTGGTCACATTGTTACCAATTATCATGTCATTGCTAA
ATTAGCTACTGATCAAAGTGGACTGCAGCGTTGTAAGGTTTCCTTAGTAAATGCTAAAGGAGAAAGCATAGCTAAGGAAGCGAAGATTGTAGGTGTTGAT
CCAGCATATGATCTGGCTGTTCTCAAGGTTGATGTTGAAGGTGATGAAGTAAAACCAATCTCTGTTGGTACCTCCCGTGGCTTACGTGTAGGTCAAAGTT
GCTTTGCCATTGGAAATCCCTATGGATTTGAAAACACTCTGACAACTGGGGTAGTTAGTGGATTAGGCAGGGAAATACCTGCGCCAAATGGAGCCGCCAT
TAAGGGAGCTATTCAAACAGATGCTGCTATTAATGCTGGGAATTCAGGTGGCCCATTGATTGATTCATCTGGTCATGTAATTGGTATAAATACTGCGACC
TTCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9F7.JPG