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Details




NbTI09F08

Phenotype Description
Stunted plants, chlorotic leaves, less number of branches
Annotation
Solyc09g011080.2.1;genomic_reference:SL2.50ch09 gene_region:4413327-4416467 transcript_region:SL2.50ch09:4413327..4416467- functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 **** Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "
ref|XP_009762594.1|;PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic isoform X2 [Nicotiana sylvestris]
NbS00044990g0002.1;protein AED:0.04 eAED:0.04 QI:333|0.66|0.57|1|1|1|7|326|449; (*SWP) sp|Q40460|RCA1_TOBAC (e_value=0.0) Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT2G39730.1 (e_value=0.0) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474;; (*ITAG) Solyc09g011080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4413327-4416467 transcript_region:SL2.40ch09:4413327..4416467- functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 **** Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core ";
AT2G39730.1;| Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474
GO ID (Nr annotation)
GO:0009570 GO:0005524
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005874 GO:0005886 GO:0005938 GO:0030027 GO:0030496 GO:0032154 GO:0043296 GO:0003924 GO:0005200 GO:0005525 GO:0007017 GO:0007264 GO:0008152 GO:0030334 GO:0032467 GO:0036089 GO:0043123 GO:0043297 GO:0044319 GO:1902766
Sequence
>NbTI09F08
GGACGTTGTCAAGATTGTCGATAGCTTCCCTGGACAATCTATCGACTTTTTCGGTGCACTGAGGGCGAGAGTATACGATGATGAAGTAAGGAAGTGGGTA
TCAGGCACTGGAATTGAAAAGATTGGAGACAAACTTTTGAACTCTTTTGACGGACCACCAACTTTCGAGCAACCAAAGATGACCATTGATAAGCTCCTCG
AGTACGGTAACATGCTTGTACAAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATCTCAAAGAGGCTGCACTTGGTGATGCCAATGCTGA
TGCCATTAACAATGGATCCTTCTTTACTAGTTAGTATCTTCGTCGAGTTGAAGCCTAAAACAAGAGGAGAAGAAGCACAACATGCTGATGTTCCTGTTGG
TGAAGGCTCCACTCATTCAATTGCAACTAAACTTGATTCAACTTCTAGGGCTGAAGATGGAAGCTATCTTTTCAAATTTTAAGGGCACATTTGTGGGAGT
AGCTATTTGATATGACCAGAATTATGTATTTTTGAAGTCAGTTCTGTTTTGTTAATACAAGATTTGGTTGAGCTTTTGTATCAGTTATGTAATGCTATGT
AATCAAATTCTTCATTTTGAATCTCAAGG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9F8.JPG