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Details




NbTI09F12

Phenotype Description
Severely stunted, bushy plants, crinkled top leaves, very short internodes
Annotation
Solyc06g074670.2.1;genomic_reference:SL2.50ch06 gene_region:42598623-42602866 transcript_region:SL2.50ch06:42598623..42602866- functional_description:"Bifunctional polymyxin resistance arnA protein (AHRD V1 ***- B6TQB1_MAIZE); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "
ref|XP_010542574.1|;PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 isoform X1 [Tarenaya hassleriana]
NbS00020879g0005.1;protein AED:0.15 eAED:0.13 QI:0|0.9|0.81|1|0.9|1|11|0|449; (*SWP) sp|Q6D2F1|ARNA_ERWCT (e_value=3e-63) Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1;; (*TAIR) AT1G08200.1 (e_value=0.0) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389;; (*ITAG) Solyc11g066720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49591441-49595951 transcript_region:SL2.40ch11:49591441..49595951+ functional_description:"Bifunctional polymyxin resistance arnA protein (AHRD V1 ***- B6TQB1_MAIZE); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase ";
AT1G08200.1;| Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389
GO ID (Nr annotation)
GO:0003824 GO:0050662
GO ID (Arabidopsis annotation)
GO:0003824 GO:0050662
GO ID (Tomato annotation)
GO:0003824 GO:0050662
GO ID (Niben annotation)
GO:0003824 GO:0050662
Sequence
>NbTI09F12
CTTGGATCTCCTTTCTATTATTTCATTTTTCCCTCTCTTTTCAGAACCTTTTAAGACGTGAACCACTGAAACTAGTCGACGGTGGGGAATCACAGAGAAC
TTTTATATATATCAAGGATGCTATTGAAGCTGTTCTCTTGATGATTGTGAGTTTGACCTCCACCTTCTTTCATTTAAATTTTTCAGGTGCATAAATTTAT
ATATGCTGTTTCACTCTTTTTCTATCAGGAAAATCCTGCAAGGGCAAATGGCCACATTTTTAATGTGGGCAATCCTAACAATGAAGTTACTGTGCGGCAG
CTGGCTGAAATGATGACTCAGGTGAATTGAATGATTGCGTTTTGTGTTTTCCCTCAATTTTTCTTCCTTTGGGCTTTATTTTAGTTCTACATCTTAGTAC
AGCGTCCGTCCACCATCTATTTTTCTCAGCGCCTTTTCTTGCATAACAACAGGTTTATTCGAAGGTGAGTGGAGAATCTTCTCTTGAAACGCCCACCGTT
GATGTAAGTTCTAAAGAATTTTATGGAGAGGGGTACGATGACAGTGACAAGAGAATTCCGGATATGACAATAATCAACAAACAGCTTGGTATGTGTGTGT
TTTCTCATCTATGGATT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9F12.JPG