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Details




NbTI09G01

Phenotype Description
Moderately stunted plants, yellow and green leaves
Annotation
Solyc03g005780.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch03 gene_region:543035-543838 transcript_region:SL2.50ch03:543035..543838+ functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "
ref|XP_009772885.1|;PREDICTED: chlorophyll a-b binding protein 50, chloroplastic-like [Nicotiana sylvestris]
NbS00016045g0001.1;protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=3e-180) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P07369|CB2G_SOLLC (e_value=0.0) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1;; (*TAIR) AT1G29930.1 (e_value=1e-162) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein ";
AT1G29930.1;| Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267
GO ID (Nr annotation)
GO:0009522 GO:0009523 GO:0009535 GO:0009941 GO:0010287 GO:0016021 GO:0016168 GO:0031409 GO:0046872 GO:0009416 GO:0009768 GO:0018298
GO ID (Arabidopsis annotation)
GO:0002081 GO:0002199 GO:0005747 GO:0005886 GO:0016021 GO:0043159 GO:0044216 GO:0044297 GO:0070062 GO:0072562 GO:0001848 GO:0004022 GO:0008146 GO:0019899 GO:0032553 GO:0043168 GO:0044822 GO:0050662 GO:0006066 GO:0006958 GO:0007339 GO:0008217 GO:0009414 GO:0010817 GO:0018958 GO:0019220 GO:0019932 GO:0022900 GO:0032496 GO:0034612 GO:0042742 GO:0044707 GO:0044767 GO:0045087 GO:0045732 GO:0045959 GO:0048522 GO:0050790 GO:0051384 GO:0071345 GO:0071396 GO:0071407 GO:0072593 GO:0097305 GO:1901564 GO:1901701 GO:1903522
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005654 GO:0005874 GO:0005886 GO:0005925 GO:0008290 GO:0014069 GO:0043197 GO:0045111 GO:0048471 GO:0003924 GO:0004022 GO:0005200 GO:0005516 GO:0005525 GO:0008134 GO:0030507 GO:0042608 GO:0042803 GO:0044822 GO:0046982 GO:0051015 GO:0000902 GO:0001701 GO:0006066 GO:0006811 GO:0006884 GO:0006886 GO:0006913 GO:0007264 GO:0009414 GO:0020027 GO:0030218 GO:0032092 GO:0035264 GO:0045766 GO:0045807 GO:0048873 GO:0051016 GO:0051017 GO:0055114 GO:0071300
Sequence
>NbTI09G01
TCATTCTAGCTTTCCGTGTAGTAGCTGCATTCAAGAGTTTCTCATCTACTTTCTATAATGGCAGCTGCTACAATGGCTCTCTCTTCCTCTTCATTTGCCG
GAAAGGCGGTAAAACTCTCACCATCTTCCTCTAAAATCACTGGAAATGGAAAAGTTACCATGAGGAAGACGGTTACCAAGGCCAAGCCTGTTTCTGCTGG
TAGCCCGTGGTATGGTCCTGACCGTGTCAAGTACTTGGGACCATTCTCTGGTGAGTCTCCCAGCTATTTGACTGGTGAGTTTCCTGGTGACTATGGATGG
GACACTGCTGGACTTTCAGCCGATCCTGAAACTTTCGCCAAAAACCGTGAGCTAGAGGTTATCCACTGCAGATGGGCGATGCTTGGAGCTCTTGGTTGCG
TCTTCCCCGAGCTCTTGGCACGTAGCGGTGTCAAATTCGGTGAAGCTGTATGGTTCAAGGCTGTATCCCAAATTTTCAGCGAGGGTGGACTTGACTACTT
GGGCAACCCAAGTTTGGTTCACGCACAAAGCATCTTAGCCATATGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGTTATCGTGTTGCTGGTGGG
CCTCTTGGTGAGGTTGTCGACMCACTCTATCCCGGTGGTAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTAAAAG
AGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATCGTCACC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:9E1-9H12[10-31-12]//9G1..JPG