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Details




NbTI09G03

Phenotype Description
Stunted plants
Annotation
Solyc01g081480.2.1;genomic_reference:SL2.50ch01 gene_region:73194021-73197709 transcript_region:SL2.50ch01:73194021..73197709+ functional_description:"Genomic DNA chromosome 5 P1 clone MVA3 (AHRD V1 **-- Q9FN84_ARATH)"
ref|XP_009789184.1|;PREDICTED: uncharacterized protein LOC104236862 [Nicotiana sylvestris]
NbS00020222g0003.1;protein AED:0.33 eAED:0.33 QI:0|0.5|0.28|0.71|1|1|7|0|388; (*TAIR) AT5G17670.1 (e_value=6e-123) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5821082-5822600 FORWARD LENGTH=309;; (*ITAG) Solyc01g081480.2.1 (e_value=2e-161) genomic_reference:SL2.40ch01 gene_region:73194021-73197709 transcript_region:SL2.40ch01:73194021..73197709+ functional_description:"Genomic DNA chromosome 5 P1 clone MVA3 (AHRD V1 **-- Q9FN84_ARATH)";
AT5G17670.1;| Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5821082-5822600 FORWARD LENGTH=309
GO ID (Nr annotation)
GO:0009941 GO:0016788 GO:0006505 GO:0006886
GO ID (Arabidopsis annotation)
GO:0000786 GO:0005634 GO:0003677 GO:0046982 GO:0006334
GO ID (Tomato annotation)
GO:0005615 GO:0005886 GO:0016021 GO:0030670 GO:0031088 GO:0031902 GO:0045121 GO:0061742 GO:0070062 GO:1990836 GO:0019899 GO:0019904 GO:0046716 GO:0050821 GO:0061740
GO ID (Niben annotation)
GO:0097381 GO:0046872 GO:0047555 GO:0007165 GO:0007601 GO:0008152
Sequence
>NbTI09G03
ACAACTTAGATATGTATGTATAGCAGGGAGGTATATTCAAGGGTCTCGTTTCCTTGGTTCAAGTTCAACATACAGTTCTGAACTGGAAGCTGGTGTTGAC
CAGCCAACGTCAGAGGTTGCTGCAGTAAGCAACACAAATTCAGAAACAGCTTCCACTTTCCGTGCACGGTTTGTTGGTCAAGGCTACAAGCAGGTTTGCG
GCCAGGCAGATGTCTGGGGTGATGGAGTTGTGCCAGAAGTCTCAGCTCATCTGAAAGGTGCACTTAACATCACTCTGGATGGAGTTTACCATTCCCCTGT
TGGTTCTGATGATGCTACTAGACCATGGTATGGTTCTCCWGTTGTTGTCRAACAATGGATCCGACACCTGCTTGTCTGATTATATAGTTCTCATGGTAAA
TATTAGGCAAATTTACCCTATTATTTGTGACAAATACATAACATTGTTCTTCAGAATGCATTATCTGTGGCAAATGGAGAACATTGTTCGTAATCACATT
GTGAGCCAATTAATGAGATCTTCCTCAAGGCTCTATGAATTACCCTTATGCTTGATTACTTGTTATTATGCTTTCCAATCTTAATCAGCAGTAAGATTGA
AGAAAGACATAACTTTCTATGAGCAGTTGAAAATGTTTTGTTATCATGTTTCATTAACTGCCACTTATGTATGCAACGGAGATACAGGAAAAACATTCAT
TACATTTTACTGAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9G3.JPG