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Details




NbTI09G12

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc02g085130.2.1;genomic_reference:SL2.50ch02 gene_region:42689477-42691624 transcript_region:SL2.50ch02:42689477..42691624+ functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "
ref|XP_009786613.1|;PREDICTED: tubby-like F-box protein 5 [Nicotiana sylvestris]ref|XP_009786614.1| PREDICTED: tubby-like F-box protein 5 [Nicotiana sylvestris]
NbS00035897g0005.1;protein AED:0.25 eAED:0.25 QI:0|0.4|0.5|1|0.4|0.16|6|439|488; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q6Z2G9|TLP5_ORYSJ (e_value=0.0) Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=6e-166) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc02g085130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42689477-42691624 transcript_region:SL2.40ch02:42689477..42691624+ functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal ";
AT2G18280.2;| Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394
GO ID (Nr annotation)
GO:0005634 GO:0005829 GO:0005886 GO:0005929 GO:0009536 GO:0035091 GO:0009620 GO:0061512
GO ID (Arabidopsis annotation)
GO:0005791 GO:0005829 GO:0009986 GO:0031526 GO:0031965 GO:0043025 GO:0045177 GO:1990769 GO:0003845 GO:0004957 GO:0005496 GO:0050661 GO:0006704 GO:0006713 GO:0007186 GO:0007204 GO:0007565 GO:0010628 GO:0010700 GO:0014827 GO:0014832 GO:0018963 GO:0030818 GO:0030819 GO:0031667 GO:0032570 GO:0042493 GO:0043456 GO:0045907 GO:0046010 GO:0046676 GO:0060137 GO:0071222 GO:0071347 GO:0071392 GO:0090331 GO:1901380 GO:1902074 GO:1903170 GO:1903640 GO:1904320 GO:1904322 GO:1904325 GO:1904326 GO:1904330 GO:1904343 GO:1904346 GO:1990767 GO:2000391 GO:2000978
GO ID (Tomato annotation)
GO:0005577 GO:0005938 GO:0009897 GO:0031091 GO:0070062 GO:0072562 GO:0005102 GO:0005198 GO:0050839 GO:0006954 GO:0007160 GO:0009306 GO:0031639 GO:0034116 GO:0042730 GO:0045907 GO:0045921 GO:0050714 GO:0051258 GO:0051592 GO:0070374 GO:0070527 GO:0072378 GO:0090277 GO:1902042 GO:2000352
GO ID (Niben annotation)
GO:0005833 GO:0005344 GO:0005506 GO:0016491 GO:0019825 GO:0020037 GO:0000122 GO:0015671 GO:0044710
Sequence
>NbTI09G12
TCGGAGTTAACGACGGTTTCATTGGTGGTACCACTGGTGGTTCCGGCGATATGATATAAGTCTAAAGCTTTGCCGATCAAGGGTTCCGCCCGAGGACGTG
TATCTCACCTCATTTAACCGCGTTTTTATCTTCGAACCTTTTTCGATCTCTACATTCCGGAGCTGTATTTCACCCATTTCATCTTCTTTGTTCAGGAAAG
GTCCAATTCATGTGATTGATAGAAATGTCATTCAAGAGCATTGTTCGTGAGCTGAGGGAGATGAAAGATGGGATAGGGAATATATCAAGGAGGGGAGCAG
AAAGAAAGCAGCATTGGAGCAACAGAACCCGGTCACATATTGTCCCTGATGTGGCCTTCTCAGATCCCATTGAACAAGGGCAATGGGCAAATTTACCTCC
AGAACTTCTTTTGGATATCATCCGCAGGGTTGAAGAGAGTGAGGCATCGTGGCCTGCTCGTTCTGTCATTGTCTTTTGTGCATCTGTTTGCAAGTCTTGG
AGGGAAATTACCAAGGAGATTGTTAAGACTCCTGAGGAATGTGGTAGGCTTACCTTTCCCATTTCACTGAAGCAGCCGGGTCCTCGTGAATCCCCAATCC
AGTGCTTTATCAAACGGGATAGAGCTAATTCAGTTTATCGCCTCTACTTTGGTATGACACCGTCTGAGGATGAGAGAGATAAACTATTGTTGGCTGCCAA
AAAGATCAGAAAGGGCAACAMGCACAGACTTTGTGATTTCATTGGTTGCAGATGATTTTTCTCGGGCTAGCAATAC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9G12.JPG