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Details




NbTI09H01

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc07g049260.2.1;genomic_reference:SL2.50ch07 gene_region:56851098-56854907 transcript_region:SL2.50ch07:56851098..56854907- functional_description:"UBX domain-containing protein 1 (AHRD V1 **-- C8V7E9_EMENI); contains Interpro domain(s) IPR012989 SEP "
ref|XP_009788329.1|;PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Nicotiana sylvestris]
NbS00018534g0011.1;protein AED:0.11 eAED:0.12 QI:0|1|0.75|1|1|1|4|0|395; (*GB) gi|13123657|gb|AAK12935.1|AF323103_1 (e_value=2e-137) phosphatase-like protein Mtc923 [Medicago truncatula];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=3e-111) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G04210.1 (e_value=3e-120) | Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303;; (*ITAG) Solyc07g049260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56851098-56854907 transcript_region:SL2.40ch07:56851098..56854907- functional_description:"UBX domain-containing protein 1 (AHRD V1 **-- C8V7E9_EMENI); contains Interpro domain(s) IPR012989 SEP ";
AT4G04210.1;| Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303
GO ID (Nr annotation)
GO:0005634 GO:0005829 GO:0043130 GO:0007030 GO:0031468 GO:0043161 GO:0061025
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0043229
Sequence
>NbTI09H01
TCGTGGAATTCACACTTTCTCTGATCTGAATCGTCGGCCTGTTACCGGTTCTGGTAGTGACTCCGATGAGCCTCAAGAGTATTATACCGGCGGAGAAAAA
AGTGGAATGCTCGTTCAAGATCCATCTAAAGCAAATAATGTGGATGCAATATTCGATCAAGCTAGACAATATGCAGCTGTTGAAGCACCTCCTGCATCTT
CTGGCTCTAGAAGTTTTTCTGGAACTGCTAGAAGACTTACGGGTGAGGCTGTGTCCGCTGCTCCTCAGCTACCTGAGAGTATTACTCATGTTATCACTTT
CTGGACCAATGGGTTCACTATAGATGAGGGGCCCTTGCGGAGGTTCGATGATCCAGAAAATGCCTCTTTCTTAGAGAGTATCCGGAAGTCCGAATGCCCA
AAAGAACTTGAACCAGAAGATAGGAGGACATCTGTGCGAGTTAATCTGACAAGCAGAGAGGAGGACTGCMCTGTTCCAGAGAAGCGTCGTGCTACATTTC
AGGGTGTGGGAAGAACTTTAGGTAGCACTGGCAATGCTGAACAAGTTGAGTCAATTGGTGCTGTCTCATCATCCACCGCAGATCCAACMCCATCAGTGGG
CCTAGTTGTTGATCAATCACAGCCTTCAACCTCAATTCAACTGAGATTGGCAGATGGTACACGAATGGTTTCTCAGTTTAACTTCCAACACACAATCAGA
GATATTAGAGGGTTTATTGATGCATCAAGGGCCTGGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9H1.JPG