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Details




NbTI09H02

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc06g005710.2.1;genomic_reference:SL2.50ch06 gene_region:759915-763838 transcript_region:SL2.50ch06:759915..763838+ functional_description:"cDNA clone 002-143-C11 full insert sequence (AHRD V1 *--- B7F1B2_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "
ref|XP_009621811.1|;PREDICTED: protein TIC 62, chloroplastic [Nicotiana tomentosiformis]
NbS00042661g0005.1;protein AED:0.19 eAED:0.19 QI:0|0.5|0.4|1|1|1|5|0|453; (*GB) gi|225434849|ref|XP_002282730.1| (e_value=5e-135) PREDICTED: uncharacterized protein LOC100246732 [Vitis vinifera];; (*TAIR) AT3G46780.1 (e_value=4e-103) | Symbols: PTAC16 | plastid transcriptionally active 16 | chr3:17228766-17231021 FORWARD LENGTH=510;; (*ITAG) Solyc06g005710.2.1 (e_value=1e-148) genomic_reference:SL2.40ch06 gene_region:759915-763838 transcript_region:SL2.40ch06:759915..763838+ functional_description:"cDNA clone 002-143-C11 full insert sequence (AHRD V1 *--- B7F1B2_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain ";
AT3G46780.1;| Symbols: PTAC16 | plastid transcriptionally active 16 | chr3:17228766-17231021 FORWARD LENGTH=510
GO ID (Nr annotation)
GO:0009508 GO:0009535 GO:0009941
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005886 GO:0016021 GO:0043209
Sequence
>NbTI09H02
GGGATGTAGCAACTCTGCTATCTCTTTCCAAAATTCAATATTCATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTACAACTACACCCCATCCAAGA
TTATCATTCAAGAATTCAAGATTCACTGTTTTTGCTAAGAAATCTGGTTCTTTCCCAAATTTTCGTCTTGGCAAATCAGCTGAGTCTTCTAATGGGGAAA
ATCAAGAAACTACTACAAGCAATTCTGGCATTCCTTTCAGTTTTGATTTTGGTAAGTTACCTGATATGAAGTCTTTGATACCTGTTAGCGCCAATCCATC
TTCTGGTTTGGCTTTTGGAAGGCAAAGGGCAAAGGATCCTGGAACAGTTTTTGTTGCTGGTGCTACTGGACAAGCTGGTGTCCGCATTGCACAGACATTG
CTTCGAGAAGGTTTTAGTGTCAGAGCTGGAGTTTCTGACCTTGGTGCAGCCCAAGAGCTAGCTCAGTTAGCTGTTAGCTACAAGGTAATCTCCAACGATG
AGTCGAAACGCCTGAATGCAGTTGCATCCACATTTCAAGATGCAGAATCAATTGCAAAAGCAATAGGAAATGCTAGCAAAGTTGTGGTAACTATTGGTAA
GGGAGAGGATGGTCCTACAACTGAAGTCACCACAACAGATGCCGTACAAGTAATACAAGCGGCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTAT
GATGAATCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9H2.JPG