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Details




NbTI09H03

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc03g117940.2.1;genomic_reference:SL2.50ch03 gene_region:60972959-60976823 transcript_region:SL2.50ch03:60972959..60976823+ functional_description:"U2 small nuclear ribonucleoprotein A&apos (AHRD V1 ***- Q1HPT8_BOMMO)"
ref|XP_009629147.1|;PREDICTED: U2 small nuclear ribonucleoprotein A' [Nicotiana tomentosiformis]
NbS00010743g0014.1;protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|8|290|288; (*GB) gi|77416949|gb|ABA81870.1| (e_value=2e-155) unknown [Solanum tuberosum];; (*SWP) sp|P43333|RU2A_ARATH (e_value=2e-117) U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2;; (*TAIR) AT1G09760.1 (e_value=1e-118) | Symbols: U2A' | U2 small nuclear ribonucleoprotein A | chr1:3159476-3161603 REVERSE LENGTH=249;; (*ITAG) Solyc03g117940.2.1 (e_value=4e-157) genomic_reference:SL2.40ch03 gene_region:60972959-60976823 transcript_region:SL2.40ch03:60972959..60976823+ functional_description:"U2 small nuclear ribonucleoprotein A&apos (AHRD V1 ***- Q1HPT8_BOMMO)";
AT1G09760.1;| Symbols: U2A' | U2 small nuclear ribonucleoprotein A | chr1:3159476-3161603 REVERSE LENGTH=249
GO ID (Nr annotation)
GO:0005515
GO ID (Arabidopsis annotation)
GO:0005515
GO ID (Tomato annotation)
GO:0005515
GO ID (Niben annotation)
GO:0005515
Sequence
>NbTI09H03
ACCTTAAGCAGCGATAATATAGGGGTTTTTCTTGCTTCGACTCCAGAGCTGCAAAAGAAAAAGGAACAAGTGATAGAAAAATGGTGAGGCTAACGGCGGA
TTTGATTTGGAAAAGTCCTCATTTCTTCAATGCCATTCGCGAACGCGAGTTAGATCTTCGAGGAAATAAGATTCCTGTTATTGAGAACTTGGGTGCTACT
GAGGATCAATTCGACACAATTGATTTATCTGATAATGAGATTGTTAAACTGGAGAATTTTCCATATCTGAATCGGCTTGGAACCTTACTAATGAACAACA
ATAGGATTACGCGTATTAACCCAAACATTGGAGAGTTTCTGCCTAAGTTGCATACTTTGATTCTCACCAGCAATAGACTTACAAATTTGGTTGAAATTGA
TCCGCTTGCATCTCTATCAAACCTGAAGTTTCTTAGTTTGCTTGATAACAATATCACAAAGAGACCAAATTATCGCCTTTATGTCATTCACAAATTGAAG
TCCTTGCGTTTGCTGGATTTCAGGAAAGTCAAGCAAAAGGAGCGATTGGAAGCAAGTAATTTATTTGCATCAGAAGAAGCTGAAGAACAGGCTAAAAAGG
AATCTGTGAAGACCTTTGTACCTGGTGAGGTTCC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9H3.JPG