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Details




NbTI09H06

Phenotype Description
Stunted plants, more number of branches (loss of apical dominance)
Annotation
Solyc01g008970.2.1;genomic_reference:SL2.50ch01 gene_region:2988194-2990000 transcript_region:SL2.50ch01:2988194..2990000- functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "
ref|XP_009773671.1|;PREDICTED: UBP1-associated protein 2B-like [Nicotiana sylvestris]ref|XP_009773673.1| PREDICTED: UBP1-associated protein 2B-like [Nicotiana sylvestris]ref|XP_009773674.1| PREDICTED: UBP1-associated protein 2B-like [Nicotiana sylvestris]ref|XP_009773675.1| PREDICTED: UBP1-associated protein 2B-like [Nicotiana sylvestris]ref|XP_009773676.1| PREDICTED: UBP1-associated protein 2B-like [Nicotiana sylvestris]
NbS00007950g0007.1;protein AED:0.12 eAED:0.15 QI:0|0|0|0.75|0|0|4|0|441; (*GB) gi|82621124|gb|ABB86250.1| (e_value=1e-101) RNA-binding protein AKIP1-like [Solanum tuberosum];; (*SWP) sp|Q60668|HNRPD_MOUSE (e_value=9e-20) Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2;; (*TAIR) AT3G56860.5 (e_value=2e-79) | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21050708-21052144 REVERSE LENGTH=478;; (*ITAG) Solyc01g008970.2.1 (e_value=5e-106) genomic_reference:SL2.40ch01 gene_region:2988194-2990000 transcript_region:SL2.40ch01:2988194..2990000- functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 ";
AT2G41060.2;| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:17127138-17128493 FORWARD LENGTH=451
GO ID (Nr annotation)
GO:0000166 GO:0003676
GO ID (Arabidopsis annotation)
GO:0005773 GO:0030057 GO:0030141 GO:0043234 GO:0044421 GO:0044459 GO:0004713 GO:0005102 GO:0019904 GO:0045295 GO:0046872 GO:0001819 GO:0001934 GO:0001944 GO:0002275 GO:0006066 GO:0006629 GO:0006954 GO:0007166 GO:0007420 GO:0010033 GO:0010556 GO:0016192 GO:0018193 GO:0031326 GO:0032940 GO:0033604 GO:0042592 GO:0043306 GO:0043408 GO:0045621 GO:0045859 GO:0046676 GO:0046777 GO:0050730 GO:0050829 GO:0050830 GO:0050832 GO:0050870 GO:0051705 GO:0070887 GO:0071702 GO:0080134 GO:0098609 GO:1902533
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005615 GO:0043195 GO:0045095 GO:0005184 GO:0008233 GO:0016521 GO:0031858 GO:0001541 GO:0001662 GO:0001821 GO:0002865 GO:0002878 GO:0007204 GO:0007218 GO:0008284 GO:0010579 GO:0010656 GO:0010976 GO:0019233 GO:0019933 GO:0021983 GO:0031175 GO:0032755 GO:0032880 GO:0034260 GO:0042594 GO:0043170 GO:0043267 GO:0043547 GO:0045471 GO:0045860 GO:0045909 GO:0045944 GO:0046034 GO:0051968 GO:0060078 GO:0060124 GO:0060253 GO:0070374 GO:0070445 GO:0071385 GO:0090274
Sequence
>NbTI09H06
CCCGAACAAGAACAAGAACAAGAAGAGTACCAAAACGACGCTGTAGAAGAAGAAGAATCAGTTCAAGAGGGCGAAGAAGAACCAGACCCCGAAGAAGAAG
ATGAGAATGATGACGGTGATGATAATGAAGAAGAAGAGGAAGAAAATCCAGGATCTGCAAATAACGCCGTAAATGAAGTTAACGGAGGCGGTAGTGAGGT
GAAGAAGGAAGGAGGAGGCGACGAAGAAGAGGATTTAGAAGATGAGCCACTCGAGAAGCTTCTAGAACCTTTCACGAAGGATCAACTTACAGCGCTTATA
AAAGAAGCTTTAGTGACTTATCCTAATTTGAAGGATAATATCCAAAAATTAGCCGATAAGGATCCGGCACACCGCAAATCTTTGTGCACGGCTTGGGTTG
GGACACTACGGCCGAAACCCTAACGAGCGTGTTCGGAAAGTACGGTGAGATTGAGGATTGTAAGGCTGTTACGGATAAGGTTAGTGGGAAGTCAAAAGGA
TACGGGTTTATTTTGTTTAAGCACAGGAGTGGTGCTAGGAAAGCATTGAGGGAACCACAAAAGAAAATTGGTACTAGGATGACTTCTTGCCAGCTAGCTT
CGGCTGGGCCGGTCMCTGCCCCGCCCCCTACAGCAGCGGCCGTTCCTCCGGTTTCTGAGTATACTCAGAGGAAGATTTTTGTTAGCAATGTGGCAGCTGA
TCTTGATCCTCAAAAGCTGTTGGAGTTTTTCTCTAAGTTTGGTGAAG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9H6.JPG