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Details




NbTI09H11

Phenotype Description
Weak plant
Annotation
Solyc04g082010.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch04 gene_region:63418757-63419269 transcript_region:SL2.50ch04:63418757..63419269- functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain "
ref|XP_009771635.1|;PREDICTED: plastocyanin [Nicotiana sylvestris]
NbS00010560g0001.1;protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|167; (*GB) gi|130271|sp|P17340.1|PLAS_SOLLC (e_value=1e-78) RecName: Full=Plastocyanin, chloroplastic; Flags: Precursor;; (*SWP) sp|P17340|PLAS_SOLLC (e_value=4e-80) Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1;; (*TAIR) AT1G76100.1 (e_value=2e-69) | Symbols: PETE1 | plastocyanin 1 | chr1:28554217-28554732 REVERSE LENGTH=171;; (*ITAG) Solyc04g082010.1.1 (e_value=2e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63418757-63419269 transcript_region:SL2.40ch04:63418757..63419269- functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain ";
AT1G20340.1;| Symbols: DRT112, PETE2 | Cupredoxin superfamily protein | chr1:7042770-7043273 REVERSE LENGTH=167
GO ID (Nr annotation)
GO:0009535 GO:0005507 GO:0009055 GO:0055114
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI09H11
AGTAATAAGAATAGTGAAAAGCAAGACAATGGCCAGTGTAACCTCTGCTGCAGTTACTATCMCATCATTCACTGGCCTTAAATCCAGTGCATCTTCCAAA
ATTAGCAATGTAGCCAAAATGGTGTCCACCAACCAAACATCCAAAATGGTAGTAAAGGCTTCACTAAAAGATGTAGGTRCAGTTGTTGTTGCTACAGCTG
CAAGTGCAATACTAGCTAGCAATGCCTTAGCTATTGAAGTATTGCTTGGTGGCGATGATGGCAGTCTTGCTTTTGTTCCTGGAAACTTCAGCGTTAGCGC
CGGTGAGAAAATTACGTTCAAGAACAATGCAGGGTTCCCACACAACGTTGTATTTGATGAAGATGAAATTCCATCTGGTGTTGATGCATCTAAGATTTCA
ATGTCTGAAGAGGACCTTCTCAATGCACCTGGGGAGACTTACTCTGTCACTTTGAGTGAGAAAGGTACCTACAGTTTTTACTGTTCACCTCATCAGGGAG
CTGGAATGGTTGGCAAAGTTACTGTTAACTAATTCTAGTTAGTCTCTTTATCATGTGTAATAGTCAACTTGTTTCTATTCAAATCCCCTGAATCTTTTGT
TGTATGTCTTTTTTAGGATATAATCATAAGTTGGTGG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:9E1-9H12[10-31-12]//9H11.JPG