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Details




NbTI11D11

Annotation
Solyc01g105030.2.1;genomic_reference:SL2.50ch01 gene_region:85087662-85089049 transcript_region:SL2.50ch01:85087662..85089049+ functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "
ref|XP_009770890.1|;PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Nicotiana sylvestris]gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
NbS00042109g0018.1;protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|256; (*SWP) sp|P27524|CB4A_SOLLC (e_value=3e-163) Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1;; (*TAIR) AT1G15820.1 (e_value=1e-143) | Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446685-5447676 REVERSE LENGTH=258;; (*ITAG) Solyc01g105030.2.1 (e_value=2e-164) genomic_reference:SL2.40ch01 gene_region:85087662-85089049 transcript_region:SL2.40ch01:85087662..85089049+ functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein ";
AT1G15820.1;| Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446685-5447676 REVERSE LENGTH=258
GO ID (Nr annotation)
GO:0016020 GO:0009765
GO ID (Arabidopsis annotation)
GO:0016020 GO:0009765
GO ID (Tomato annotation)
GO:0016020 GO:0009765
GO ID (Niben annotation)
GO:0016020 GO:0009765
Sequence
>NbTI11D11
CCCGGAGTGGCTCGATGGCTCGCTCCCTGGTGACTATGGTTTTGACCCACTTGGTCTTGGCAAGGACCCTGCATTCTTGAAATGGTACAGAGAAGCAGAG
CTCATTCACGGCAGATGGGCAATGGCTGCAGTATTGGGCATCTTTGTTGGTCAAGCCTGGAGTGGCATCCCATGGTTCGAGGCTGGTGCTGACCCTGGTG
CTATTGCACCTTTCTCTTTTGGCTCACTTCTTGGCACTCAACTTCTACTCATGGGGTGGGTTGAGAGCAAAAGGTGGGTGGACTTCTTCAACCCTGAGTC
TCAGTCAGTAGAGTGGGCAACTCCATGGTCCAAGACTGCTGAGAACTTTGCCAACTTCACTGGAGAACAGGGTTACCCTGGCGGCAAATTCTTTGATCCC
TTGTCCTTAGCTGGTACACTTCAGGACGGTGTTTACATCCCTGACACAGAGAAGCTTGAGAGACTAAAGGTTGCTGAGATCAAGCATGCTAGACTTGCTA
TGTTAGCCATGCTAATTTTCTACTTTGAGGCCGGGCAAGGAGAAGACACCCCTTGGAGCCCTTGGTTTGTAAAGGGATTTCTATTATTTAACATTTCATT
GTAAAGAGTCACTGGATGTAGAAAGAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit