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Details




NbTI11E02

Annotation
Solyc12g014390.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch12 gene_region:5274700-5277011 transcript_region:SL2.50ch12:5274700..5277011- functional_description:"50S ribosomal protein L13 (AHRD V1 ***- B6SVH3_MAIZE); contains Interpro domain(s) IPR005823 Ribosomal protein L13, bacterial-type "
ref|XP_009786256.1|;PREDICTED: 50S ribosomal protein L13, chloroplastic [Nicotiana sylvestris]
NbS00017563g0004.1;protein AED:0.29 eAED:0.29 QI:254|1|1|1|0.75|0.6|5|244|239; (*SWP) sp|Q9SYL9|RK13_ARATH (e_value=1e-122) 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1;; (*TAIR) AT1G78630.1 (e_value=8e-124) | Symbols: emb1473 | Ribosomal protein L13 family protein | chr1:29575997-29577406 FORWARD LENGTH=241;; (*ITAG) Solyc12g014390.1.1 (e_value=7e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5274700-5277011 transcript_region:SL2.40ch12:5274700..5277011- functional_description:"50S ribosomal protein L13 (AHRD V1 ***- B6SVH3_MAIZE); contains Interpro domain(s) IPR005823 Ribosomal protein L13, bacterial-type ";
AT1G78630.1;| Symbols: emb1473 | Ribosomal protein L13 family protein | chr1:29575997-29577406 FORWARD LENGTH=241
GO ID (Nr annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0005840 GO:0003735 GO:0006412
Sequence
>NbTI11E02
CATTTGGATGAGACATGGTATCCCAAGGCTGCTGACCATGTGAACACAGACAAACCTTGGTATATTGTTGATGCCACTGATTTAATTCTTGGAAGAATGG
CATCAACTATAGCGATACATATGAGAGGAAAGAATCTCGCAACATACACTCCAAGTGTTGACATGGGTGCATTTGTCATAGTGGTTAATGCTGAGAAGGT
TGCTGTATCTGGGAAGAAGAGGACCCAAAAACTTTATAGGAGGCACTCCGGGAGACCTGGTGGGATGAAAGTGGAGACTTTCGATCAACTTCAACAGAGA
ATTCCTGAAAGAATCATTGAGCATGCTGTCCGTGGCATGCTTCCCAAAGGGAGGCTTGGTAGACAATTATTTACTCATCTTAAGGTGTATAAAGGTCCTG
ACCATCCTCATGAGGCTCAGAAACCCATTGAATTGCCCATTAGAGACAAGAGGATACAGAAGCAGCGGTGAACTCCCAACAGTGCCATTGAGGAGCAGTT
CTCATTTTTGGTTGTTGATACATTCCTTTAAGTTATTTCTGTTTAACTGGTGTAACTTCATGTTTTGATTCCAGTATTGTACCTGTTAACTATTCTTCTT
TATGCTTTTCTAGAGGTGTTTCTTTACAAATTTATTTGCCTCCACATTTTTTGAGC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit