Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI11F08

Annotation
Solyc03g007670.2.1;genomic_reference:SL2.50ch03 gene_region:2200919-2205536 transcript_region:SL2.50ch03:2200919..2205536+ functional_description:"SGT1 (AHRD V1 **-- Q2HPC2_SOLTU); contains Interpro domain(s) IPR007699 SGS "
gb|AAW82048.1|;SGT1 [Nicotiana benthamiana]
NbS00019485g0004.1;protein AED:0.22 eAED:0.22 QI:185|0.88|0.9|1|1|1|10|402|373; (*GB) gi|315307974|gb|ADU04390.1| (e_value=0.0) SGT1 [Nicotiana attenuata];; (*SWP) sp|Q0JL44|SGT1_ORYSJ (e_value=2e-151) Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1;; (*TAIR) AT4G11260.1 (e_value=6e-145) | Symbols: ATSGT1B, ETA3, RPR1, EDM1, SGT1B | phosphatase-related | chr4:6851515-6853719 REVERSE LENGTH=358;; (*ITAG) Solyc03g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2200919-2205536 transcript_region:SL2.40ch03:2200919..2205536+ functional_description:"SGT1 (AHRD V1 **-- Q2HPC2_SOLTU); contains Interpro domain(s) IPR007699 SGS ";
AT4G23570.3;| Symbols: SGT1A | phosphatase-related | chr4:12300015-12302493 FORWARD LENGTH=351
GO ID (Nr annotation)
GO:0006952
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI11F08
AACTTATTCTTTCCAGCCTAGGTTGTTTGGGAAGATAACACCTGCAAAATGCAGATATGAAGTGATGTCCACCAAAATTGAGATCCGCCTTGCAAAAGCT
GAACCCTTACACTGGACATCTCTCGAATATACGAGAGAGTCTGCTGTAGTGCAGAGGCCTAATGTGTCATCAGATGCCCCCCGGCCCAGTTATCCTTCCT
CGAAATTGAGACATACGGATTGGGATAAATTAGAGGCTGAAGTGAAAAAGGAGGAAAAAGACGAAAAATTGGATGGAGATGCAGCATTGAACAAATTTTT
CCGAGACATTTACAAAGATGCCGATGAGGACACCAGAAGAGCCATGATGAAATCCTTTGTGGAATCTAATGGGACTGTTCTGTCTACAAACTGGAAAGAA
GTCGGTGCAAAGAAGGTAGAAGGAAGCACTCCAGATGGCATGGAGCTGAAGAAATGGGAAATCTAGAAGTCAAGCTCCTGTTAACTTTCGTGACGTTTGT
TTTGTTTGTCATTTTTGGTATTGATTGTAGAAGAACTGTCCATATTTTCTTTTTTAAGGTGGAAATTTTGATCTCTTCTGTGGATTGAGATTCGTGAACT
CGCTTACAGAATTTACCTTTTATCAGGGCTTCGGAGTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit