Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI11G01

Annotation
Solyc05g052600.2.1;genomic_reference:SL2.50ch05 gene_region:61954189-61957576 transcript_region:SL2.50ch05:61954189..61957576+ functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core "
ref|XP_009590435.1|;PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Nicotiana tomentosiformis]
NbS00020569g0013.1;protein AED:0.15 eAED:0.15 QI:301|1|0.87|1|1|1|8|0|394; (*SWP) sp|O20252|S17P_SPIOL (e_value=0.0) Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G55800.1 (e_value=0.0) | Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393;; (*ITAG) Solyc05g052600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61954189-61957576 transcript_region:SL2.40ch05:61954189..61957576+ functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core ";
AT3G55800.1;| Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393
GO ID (Nr annotation)
GO:0042132 GO:0005975
GO ID (Arabidopsis annotation)
GO:0042132 GO:0005975
GO ID (Tomato annotation)
GO:0042132 GO:0005975
GO ID (Niben annotation)
GO:0042132 GO:0005975
Sequence
>NbTI11G01
GGATCTAGTGTCACGTGCTTCGCACGTACATCTCTCCTCCCTAATGTTTCTTCTCAACAGTATTCAATGACTGCAACAGCAGCTCCTAGGTCCATTTCCC
CATCATTCAGCATCAGGAGTCTGAAATCAAGCTCTTTATTTGGGGAATCATTGCACGTTGCCGCTAAAGCATCACTCAACGTTTCTAAGACTAAAAGCTA
TTCCCTAGTGACTAAATGTGAGATTGGTGATAGCCTGGAAGAATTTCTTACGAAATCAACATCAGATAAGGGGCTGATCAGTCTAATGTTATGTATGGGA
GAAGCACTCAGAACAATTGCCTTTAAAGTCAGAACAGCTTCTTGTGGAGGAACAGCTTGTGTCAACTCTTTTGGAGATGAGCAGCTTGCTGTTGATATGC
TTGCAAACAAACTCCTTTTCGATGCCTTGACTTATTCACACGTCTGCAAATATGCTTGTTCTGAGGAAGTCCCTGAGCTCCAAGACATGGGAGGCCCTGC
TGAAGGAGGATTTAGTGTTGCTTTTGATCCTCTTGATGGATCAAGTATTGTGGACACAAACTTCACTGTTGGAACCATATTTGGTGTGTGGCCTGGAGAT
AAGCTAACAGGAATCACAGGAAGAGACCAAGTCGCTGCGGCCATGGGTATATTTGGACCTCGTACTACATACGTTCTTGCTCTTAAAGAC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

© Noble Research Institute, LLC