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Details




NbTI12B02

Annotation
Solyc08g081330.2.1;genomic_reference:SL2.50ch08 gene_region:61560558-61563359 transcript_region:SL2.50ch08:61560558..61563359+ functional_description:"GPN-loop GTPase 1 (AHRD V1 **-- Q4VAB2_MOUSE); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "
ref|XP_009787624.1|;PREDICTED: GPN-loop GTPase 1 homolog [Nicotiana sylvestris]
NbS00050732g0011.1;protein AED:0.17 eAED:0.17 QI:9|1|0.66|1|1|1|6|0|334; (*GB) gi|224108772|ref|XP_002314963.1| (e_value=4e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54C25|GPN1_DICDI (e_value=3e-119) GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3 SV=1;; (*TAIR) AT4G21800.2 (e_value=2e-167) | Symbols: QQT2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:11573289-11574976 FORWARD LENGTH=379;; (*ITAG) Solyc08g081330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61560558-61563359 transcript_region:SL2.40ch08:61560558..61563359+ functional_description:"GPN-loop GTPase 1 (AHRD V1 **-- Q4VAB2_MOUSE); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding ";
AT4G21800.2;| Symbols: QQT2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:11573289-11574976 FORWARD LENGTH=379
GO ID (Nr annotation)
GO:0003924
GO ID (Arabidopsis annotation)
GO:0003924
GO ID (Tomato annotation)
GO:0003924
GO ID (Niben annotation)
GO:0003924
Sequence
>NbTI12B02
TTGAGATATTCACTTGGTCTGCCTCCGGCGCAATCATAACTGAAGCTTTTGCATCTACTTTTCCCACTGTGGTGACATATGTGGTTGATACACCACGGTC
TGAAAGTCCAGCTACTTTTATGAGCAATATGCTGTATGCATGTAGCATTCTGTACAAAACAAGGTTGCCATTGGTATTGGCATTCAACAAGACAGATGTG
GCTAATCATCAGTTTGCATTGGAGTGGATGAAAGATTTTGAGGTTTTCTATGCGGCACTAGATGCTGACAGTTCTTACACATCAACTCTGACTCGAAGCC
TCTCTCTTGCTCTTGAGGAGTTCTACAAGAATCTCAGGTCTGTTGGAGTGTCTGCAGTTTCAGGGGCTGGGATGGAGGACTTTTTCAAGGCAATTGAAGT
CAGCGCTGAGGAGTACATGGAAACTTACAAGGCTGACTTGGACAAGAGACGGGAGGAGAAGCAACAATTAGAGGAAAGACGTAGAAGGGAGAATATGGAA
AAGCTGAGAAAAGATATGGAGAAAACCGGAGGACAAACTGTAGTACTGAGCACTGGTTTGAAGGATGGAGAAGATAAGGGCAAGGCTATGATGGACGCCG
AGGATGAAGAGGAAGAAGAAGACGATGACATCAAGATTTTCAGTGAGGATGATGACGGTGACATAGATGAGGACGAAGATGAAGAAGTTGCTGGCTTTTC
ATTTTAAGATTGTACATGGTGTCTTTTGAGAAACACTACACTGTATAGGACTGATCAAGTGCTAAACCCAAAATCGAGGGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit