Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI12B08

Annotation
Solyc04g025670.2.1;genomic_reference:SL2.50ch04 gene_region:22173162-22175441 transcript_region:SL2.50ch04:22173162..22175441- functional_description:"Os02g0741900 protein (Fragment) (AHRD V1 ***- Q0DXN9_ORYSJ); contains Interpro domain(s) IPR019181 RNA-processing, Lsm domain "
ref|XP_009798322.1|;PREDICTED: protein LSM12 homolog [Nicotiana sylvestris]
NbS00007833g0002.1;protein AED:0.22 eAED:0.81 QI:0|0|0.5|1|0|0.5|2|35|71
AT1G24050.1;| Symbols: | RNA-processing, Lsm domain | chr1:8507057-8508439 FORWARD LENGTH=188
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO:0005576 GO:0008289 GO:0042742
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005747 GO:0016021 GO:0055114
Sequence
>NbTI12B08
GGGATCGCCCCTTTGGCAAGCCAAGAATTGAAGAGCGTGTTTCTGTCATTCATCTCAGTTGAAGAGACCCTGCTACCATGGAAGCTTACAACACCGAAGA
GTTCGCAGTTGGATGCATTTTATCCATCAAGACTACTTTAGGCGACGAGTTTGAAGCCCAAGTTATCGCCTTTGACAAACCCTCCAACATCCTCGTCCTT
CAAGAAGGGGTATCTGCATCAGGGCCAAAGAGAGACGTAAGGTTACTGAAAGCCAACTACATTAAAGAGTTCAGTTTTCTTGGTCAAAGCCAAGACCCAC
TTGATACCAATAAATGTTTTCTTGATCTCAATAGCGTCCAATCTAGAGAAGATTCTGCTATTAGACAAGCAGAGATAGATGCTGAGAGATTTGGCGTTGG
TGTCACTGCTGAAGCTCAGACTATATTTGATGCTTTGTCTAAAACGTTGCCTGTGTGCTGGGACAAGACTGTGATCGTTGTGATGAATGAGGTGCGTGTT
AGCAGTCCATATCTTCCTGAATCTGTTACTGGAGGCACTCCGGCTGCTAATGAACGAGTGCGGAAAGTGCTTGTATTGGAGAGGAAGAGGTTGCAAACCC
GCAATACTGGACAGTGAGAATTCTTACTGTGTTCTTTTTCTTTGGTCCGAGGTGTTCTTTGCATCATTAGCCTGCTGAGTAAACAAATACCAGAGCGTTG
GTAAAAATGCGCATCCTACTCGAGTGAAGATGTATCCGTGTCTCTCCATCTGTAAGAGGTTTGAAAAATTAGTGACTGGAGTTACTCTCTCCTCCACCCC
CTGTCTCCAAAGAAAATACAGCAAAATTTTTTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit