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Details




NbTI12E11

Annotation
Solyc06g068140.2.1;genomic_reference:SL2.50ch06 gene_region:38624657-38627697 transcript_region:SL2.50ch06:38624657..38627697+ functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "
ref|XP_009602061.1|;PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Nicotiana tomentosiformis]
NbS00038236g0010.1;protein AED:0.15 eAED:0.16 QI:0|0|0|1|0.5|0.33|3|0|383; (*GB) gi|297743458|emb|CBI36325.3| (e_value=4e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XI36|MBD10_ARATH (e_value=1e-32) Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV=1;; (*TAIR) AT1G15340.1 (e_value=9e-34) | Symbols: MBD10 | methyl-CPG-binding domain 10 | chr1:5275895-5277474 REVERSE LENGTH=384;; (*ITAG) Solyc06g068140.2.1 (e_value=1e-89) genomic_reference:SL2.40ch06 gene_region:38624657-38627697 transcript_region:SL2.40ch06:38624657..38627697+ functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding ";
AT1G15340.1;| Symbols: MBD10 | methyl-CPG-binding domain 10 | chr1:5275895-5277474 REVERSE LENGTH=384
GO ID (Nr annotation)
GO:0005634 GO:0003677
GO ID (Arabidopsis annotation)
GO:0005743 GO:0070469 GO:0008152 GO:0009723 GO:0009733 GO:0010364
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005829 GO:0008076 GO:0030424 GO:0031965 GO:0045121 GO:0004962 GO:0005251 GO:0015271 GO:0017046 GO:0031702 GO:0000122 GO:0001755 GO:0001934 GO:0006885 GO:0007200 GO:0007204 GO:0007422 GO:0007497 GO:0007568 GO:0008217 GO:0008284 GO:0014043 GO:0014070 GO:0014826 GO:0019233 GO:0019934 GO:0030318 GO:0031620 GO:0032269 GO:0034765 GO:0035645 GO:0035810 GO:0035815 GO:0042045 GO:0042311 GO:0043066 GO:0048246 GO:0048265 GO:0048484 GO:0050678 GO:0051260 GO:0051930 GO:0060406 GO:0071222 GO:0071805 GO:0086100
Sequence
>NbTI12E11
TTCCGAAACAATATTGACCCAAACATCCTTCATGGTAGTTTGGGTCATAACCAGTATGACTCGATCCGTCTATTTACCTCAAAAGATGAGAAGTAAGAGC
CTTTTTTCTTGTTCATATTTTGTTTGCGGTGTTTATCATTTTTCTCGTGAGCTTGGATAGTTCATCTTTGGTATCGTGATAGGGGAGTCGGGCCCTTACT
TTAAACATTGTGAAGCACATCAATGTAATGTCACCTTCCTAGTTACCGCAAAATCAGTGTGCAACCTTAGATATGAAAGGTAGAGAGAGTAGTTTGTAAC
TGCGTTGATGATGGATAGGTGGAGGATTACTGTGTTTTGTAGTGTACTCTGGAGATTCTCTGGGAGAGGTAGTCGTATCTAAGGGAATACAAAACATGCT
GCAATGTAGCTTGCTTGTTCACTTGACATAGATTTTACCTCCGTCGCTTTGCAGTTCATTCCAAAGCAAGGGAGTACACCAAAGAGGAATGAGGTTGTAT
TTATTGCTCCAACAGGCGAGGAGTTCAAGAACCGCAAACAGTTGGAGCAGTATCTCAAGTCACACCCTGGTAACCCTGCAATATCAGAATTTGATTGGAG
TACCGGCGAGACTCCAAGGAGATCAACAAGGATCAGTGAGAAGGCAAAGGCAATGAGACCCCAATCACTACTTGAATCACCAAAGAAAAGACGCCGAACA
TCATCTGGTGCAAAGAAAGATAGCAAGGAAGCAGAAACTGCAAGAGTTGACCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit