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Details




NbTI12G03

Annotation
Solyc09g059520.2.1;genomic_reference:SL2.50ch09 gene_region:50372011-50379351 transcript_region:SL2.50ch09:50372011..50379351- functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "
ref|XP_009770996.1|;PREDICTED: heat stress transcription factor A-8 [Nicotiana sylvestris]
NbS00035319g0006.1;protein AED:0.10 eAED:0.10 QI:279|1|1|1|1|1|2|477|321; (*GB) gi|224111416|ref|XP_002315847.1| (e_value=3e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7U5|HSFA8_ARATH (e_value=1e-74) Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1;; (*TAIR) AT1G67970.1 (e_value=9e-76) | Symbols: AT-HSFA8, HSFA8 | heat shock transcription factor A8 | chr1:25484844-25486313 REVERSE LENGTH=374;; (*ITAG) Solyc09g059520.2.1 (e_value=3e-158) genomic_reference:SL2.40ch09 gene_region:50372011-50379351 transcript_region:SL2.40ch09:50372011..50379351- functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding ";
AT1G67970.1;| Symbols: AT-HSFA8, HSFA8 | heat shock transcription factor A8 | chr1:25484844-25486313 REVERSE LENGTH=374
GO ID (Nr annotation)
GO:0005634 GO:0003700 GO:0043565 GO:0006355
GO ID (Arabidopsis annotation)
GO:0005634 GO:0003700 GO:0043565 GO:0006355
GO ID (Tomato annotation)
GO:0005634 GO:0003700 GO:0043565 GO:0006355
GO ID (Niben annotation)
GO:0005634 GO:0003700 GO:0043565 GO:0006355
Sequence
>NbTI12G03
TGTTAACACCTCCTTTACAAGACCGGTTTTTGTGTGTGATACGGAAATTGGGGTTCTCTTTGTAAAAGAGTAATTGTGTTGAATTCGGGTATTTGGTGAA
TGAAATATGGTGAAATCATTTGAGAATGTGGCGCCATTCTTGTTGAAGTGTTATGAGATGGTAGAGGATGAGTCAACGGACAGCTTGATATCTTGGGATC
AATCTGATAACTATTTCATCATATGGGATGTTCCTAAATTCTCATCTCAATTGCTTCCTAAATACTTCAAGCATAGCAACTTCTCTAGCTTCGTTCGCCA
ACTCAACATCTATGGTTTCCATAAAACAGTTACCGATAGATGGGAGTTTGCTAATGATAGCTTTCTCAAAGGCCAAAAGCATTTGCTAAAGAATATTGTT
AGAAGGAAACAGTCCAGTGTAGTCCAAAAGAAATCATCCCATCAGGTGGAGATCAAATCCTGTAAATCTGAAGAAAATAAGTATCTTGGACTGTGGGAAG
AAGTTGAGAATCTCAAGATCGATAAGAATGTGCTCACAGAGGAGTTAGTCAAGCTCAGGCAACAGCAGCAGAATTCAGAGAGCAAATTGATACTTCTTAG
AGAACAGCTAAAGGTATGGAGAAACATCAGCAACAGATGCTTTCCTTCATTGTGATGGCTATGCAAAGCCACAGACTTTTTTGGTTCAGTTCTTCCAGCC
CAAGGAAAACAATTTGCGCGTGAGTGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit