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Details




NbTI13C12

Annotation
Solyc10g077120.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch10 gene_region:59320450-59321013 transcript_region:SL2.50ch10:59320450..59321013+ functional_description:"Photosystem II core complex proteins psbY (AHRD V1 *-*- B6SR26_MAIZE)"
ref|XP_009780966.1|;PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Nicotiana sylvestris]
NbS00019583g0002.1;protein ; (*GB) gi|225424556|ref|XP_002285325.1| (e_value=4e-65) PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P80470|PSBY_SPIOL (e_value=5e-42) Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2;; (*TAIR) AT1G67740.1 (e_value=2e-32) | Symbols: PSBY, YCF32 | photosystem II BY | chr1:25394429-25394998 REVERSE LENGTH=189;; (*ITAG) Solyc10g077120.1.1 (e_value=1e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59320450-59321013 transcript_region:SL2.40ch10:59320450..59321013+ functional_description:"Photosystem II core complex proteins psbY (AHRD V1 *-*- B6SR26_MAIZE)";
AT1G67740.1;| Symbols: PSBY, YCF32 | photosystem II BY | chr1:25394429-25394998 REVERSE LENGTH=189
GO ID (Nr annotation)
GO:0009523 GO:0016021 GO:0030145 GO:0015979
GO ID (Arabidopsis annotation)
GO:0009523 GO:0016021 GO:0030145 GO:0015979
GO ID (Tomato annotation)
GO:0009523 GO:0016021 GO:0030145 GO:0015979
GO ID (Niben annotation)
GO:0009523 GO:0016021 GO:0030145 GO:0015979
Sequence
>NbTI13C12
AAACAAACCAAATTGTAACTTCAAAGCCAGAAACCCTTAACAGCAACAAAGAAATGACAGCCACCATAGGAACCATGGCCATGCTCAACGTCAAATGCTT
TACCAAAGCATCTATTAACAACCCTTCGAAGCCCAAACCCATCTCTCTTCTCTCCCTTCAAAACCTCCCAAAAGGTCTCTTGACTTCCAAGACATGTGAA
AGCACCTCAAACTTATCAAGTTCCCTCACTGGAACAGCAATTGCTGGTGCCATTTTCTCAACCCTGAGCTCATGCGACAGCGCGTTTGCAGCGCAACAAA
TCGCTGACATAGCAGAGGGAGACAACAGGGGTTTAGCACTTTTACTTCCTTTAATTCCTGCTATAGCATGGGTTCTTTACAACATTCTTCAACCAGCACT
GAACCAAATCAATAAAATGAGGAATCAGGGAGTTATTATTGGTCTCGGTCTTACTGGTTTAGCAGCATCAGGTTTTTTCAACACTCCTGAGGCTTCAGCT
GCTAGTGAAATTGCTATGATTGCTGATGCAGCAATGACAACAGAGGACAACTTTTGCTTTTTGTTGTGACTCCTGCTTTGCTTTGGGTTGCTTACAATAT
TCTACAGCCAGCTTTGAATCAGATCAACAAGATGAGACAGTGAGGATCATGTTTTGTAAAAGTGTGCAGTTGTATTGGGGACAATATTACTTATATAAAA
TTGCACCTTGACGTTTATCAATCAACTTGTCCTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit