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Details




NbTI13H10

Annotation
Solyc05g047690.2.1;genomic_reference:SL2.50ch05 gene_region:58318040-58323058 transcript_region:SL2.50ch05:58318040..58323058+ functional_description:"Histone deacetylase complex subunit SAP18 (AHRD V1 ***- B4FIB4_MAIZE); contains Interpro domain(s) IPR017250 Histone deacetylase complex, SAP18 subunit "
ref|XP_009589125.1|;PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosiformis]
NbS00007484g0002.1;protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|33667908|gb|AAQ24533.1| (e_value=1e-73) P18 [Solanum chacoense];; (*SWP) sp|O64644|SAP18_ARATH (e_value=5e-58) Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1;; (*TAIR) AT2G45640.1 (e_value=4e-59) | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH=152;; (*ITAG) Solyc05g047690.2.1 (e_value=3e-76) genomic_reference:SL2.40ch05 gene_region:58318040-58323058 transcript_region:SL2.40ch05:58318040..58323058+ functional_description:"Histone deacetylase complex subunit SAP18 (AHRD V1 ***- B4FIB4_MAIZE); contains Interpro domain(s) IPR017250 Histone deacetylase complex, SAP18 subunit ";
AT2G45640.2;| Symbols: SAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH=149
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI13H10
ATTGCTAGTAGTAGCTGATTGTGCTTCTGGTGCAGTAAAACAGATCAAGAAAACGGAGATCAATGGCGGAAGTGCAGAGAAGGGGAAGACCGTTGCCTCC
TCCTCCGGCGAGAGTCCCACCGGGTCCTCCTCCCCTCAGAATGGGCCCTCGGGTCCAACCCGTTGACCGTGAAAAGACTTGTCCACTCTTGCTTCGCGTT
TTCACCAAGATTGGAGGCCATCATAGCGATAATGATTTTGCCGTGAGAGGCAAGGAACCTAAAGATGAGGTCCAGATCTATACATGGATGGATGCTACTC
TGCGTGAATTAACTGATCTGGTGGGGAGAACGTACTCTTATCCAAATGGGAGACGACCCGATAGTGGCAGCAAAAGCTTGTGTGAACTAAAATTTCAGAT
TGGAGATTACTTGGATGTGGCTATCACGTTCCAGTGACCTGCAACAGTACCCGCATTAAAAATAGAACCATCTAGCTTGTAGTGTACTTTGTATATGCAT
TAGTTCTTATATGCTGGGCTAATGCAACCTTTTTCTGTAAAATTAACATCAAATCCAGAATGTCGATGCATTCCAGACCTATATCTTGTACTTCGTTTAT
ATCTGCAAGATGGTTTAAGCAACAAGTATATCACAAT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit