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Details




NbTI14B07

Annotation
Solyc06g073150.2.1;genomic_reference:SL2.50ch06 gene_region:41454567-41459362 transcript_region:SL2.50ch06:41454567..41459362- functional_description:"COP9 signalosome complex subunit 5b (AHRD V1 ***- B4FUK9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "
ref|XP_009617619.1|;PREDICTED: COP9 signalosome complex subunit 5b-like [Nicotiana tomentosiformis]
NbS00009217g0019.1;protein AED:0.10 eAED:0.10 QI:135|1|1|1|0.8|1|6|248|367; (*SWP) sp|Q8LAZ7|CSN5B_ARATH (e_value=0.0) COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2;; (*TAIR) AT1G22920.1 (e_value=0.0) | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A | chr1:8109882-8111895 REVERSE LENGTH=357;; (*ITAG) Solyc11g017300.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8163274-8168190 transcript_region:SL2.40ch11:8163274..8168190- functional_description:"COP9 signalosome complex subunit 5b (AHRD V1 ***- B4FUK9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 ";
AT1G71230.1;| Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B | chr1:26852560-26854255 FORWARD LENGTH=358
GO ID (Nr annotation)
GO:0005515
GO ID (Arabidopsis annotation)
GO:0005515
GO ID (Tomato annotation)
GO:0005515
GO ID (Niben annotation)
GO:0005515
Sequence
>NbTI14B07
GATCTTCAATTAACCCTTCCCCTATTTTTCACCTATAAAATTAGTGTGTATAGAAGAGCTCTACAATTGCAGTTTTTCCAAGTTCCAATGGATCCTCTCA
ATTCCTACGCATCCTCGGCGGCGATGGCGCAGCAAACCTGGGAGTTAGAGAACAACATCGTGACAATGGACGCGCCGTCGGGTTCGACACCGGAAAATTC
GGCGTCTGACGCCATATTCCACTACGACGAGGCGGCACAGACGAAGTTCCAGCGGGAGAAGCCGTGGGCTAGTGACCCTCACTTCTTTAAGCGCGTGAAG
ATCTCTGCTCTCGCGCTGCTCAAGATGGTCGTTCACGCGCGTTCCGGTGGTACGATTGAGGTGATGGGACTCATGCAGGGTAAGACTGATGGCGATGCGA
TTGTTGTCATGGACGCTTTTGCGCTTCCCGTTGAAGGCACTGAAACTAGGGTTAATGCTCAAGCTGATGCCTATGAATATATGGTCGAGTATTCACAGAC
CAACAAGCAGGCTGGTCGGCTGGAAAATGTGGTTGGGTGGTACCATTCTCATCCTGGTTATGGATGCTGGCTCTCTGGCATTGATGTTACCACACAAATG
CTTAACCAGCAATATCAGGAGCCCTTTCTTGCAGTTGTTATTGATCCAACAAGAACTGTTTCTGCTGGAAAAGTTGAGATCGGGTGCCTTTCGAACATAT
CCAGAAGGATACAAGCCTCCAGATGATCCCATCTCAG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit